Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01892 ATGGAAACAGAGCGGCGAGAAGGAAGCCAAGAGGCAGAGCGTACGGCGGCGGATACGGCGGTGCAATCGAAGTTTCGTCGTATCTGCGTGTTCTGCGGCAGTAGCTCCGGCAAGAATCCCAGCTATCAAATTGCCGCCATTCAACTCGGAAATCAACTGGTCGAAAGGAACATTGACCTTGTTTACGGCGGAGGAAGCATTGGGCTTATGGGCTTAGTTTCTCAAGCCGTTTACGATGGCGGACGTCACGTGTTAGGAGTGATACCGAAATCTCTCATGCCAAAAGAGATTACTGGAGAGACAATTGGAGAAGTAAGAGCCGTATCAGGAATGCATCAACGCAAAGCAGAAATGGCTCGTCAAGCTGATGCATTTATTGCATTGCCTGGAGGCTACGGAACATTGGAAGAACTATTGGAAGTCATCACTTGGGCTCAATTGGGCATCCACGAAAAACCGGTGGGGTTGCTCAACGTGGATGGCTACTACAATTCACTATTATCATTCATAGACAAAGCAGTTGACGAAGGTTTCGTCTCACCAGCTGCCCGTAGCATCATAGTTTCCGCCCCAACTGCCCATGCCCTCATCACCAAGCTAGAGGAGTATGTCCCAAAGCATTCCAGCGTGGCATCGAAGCTGAGCTGGGAAATGGAACAGCAGCTTGGATTTACCGTAAAGTCAGACATTGCTCGTTGA 699 49.79 METERREGSQEAERTAADTAVQSKFRRICVFCGSSSGKNPSYQIAAIQLGNQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKSLMPKEITGETIGEVRAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHEKPVGLLNVDGYYNSLLSFIDKAVDEGFVSPAARSIIVSAPTAHALITKLEEYVPKHSSVASKLSWEMEQQLGFTVKSDIAR 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27059197 27060885 - MELO3C011000.2.1 Cme03g01892 323903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01892 232 Gene3D - 14 202 - -
Cme03g01892 232 SUPERFAMILY MCP/YpsA-like 24 203 - -
Cme03g01892 232 TIGRFAM TIGR00730: TIGR00730 family protein 27 203 IPR005269 GO:0009691|GO:0016787
Cme03g01892 232 PANTHER LOG FAMILY PROTEIN YJL055W 16 229 - -
Cme03g01892 232 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 16 229 - -
Cme03g01892 232 Pfam Possible lysine decarboxylase 70 199 IPR031100 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01892 K22522 LOG; cytokinin riboside 5'-monophosphate phosphoribohydrolase [EC:3.2.2.-] - csv:101211714 446.432
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme03g01892 Cme04g00479 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01179 Cme-Chr1:14997300 Cme03g01892 Cme-Chr3:27059197 1.22E-97 dispersed
Cme01g02463 Cme-Chr1:32814717 Cme03g01892 Cme-Chr3:27059197 4.44E-84 dispersed
Cme03g01358 Cme-Chr3:23093865 Cme03g01892 Cme-Chr3:27059197 1.31E-91 dispersed
Cme03g01892 Cme-Chr3:27059197 Cme04g02527 Cme-Chr4:31553526 2.42E-124 dispersed
Cme04g02346 Cme-Chr4:30337870 Cme03g01892 Cme-Chr3:27059197 2.86E-71 transposed
Cme03g01892 Cme-Chr3:27059197 Cme04g00479 Cme-Chr4:3786107 2.66E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1089 Blo01g01592 . Bda01g00492 . Bpe02g00355 Bpe04g00242 Bma04g00242 Bma01g02363 Cmo05g00301 Cmo12g00365 Cma01g01966 . Car01g01536 Car12g00392 . . Cpe07g00372 Bhi04g00161 . . . Hepe10g0139 . . Cla08g01434 Cam08g1913 Cec08g1489 Cco08g1626 Clacu08g1604 . Cre08g1389 . . Cone17ag1395 . Lsi04g01732 Csa03g04269 Chy04g00426 Cme03g01892 . Blo18g00781 . Bda01g01529 Bpe02g01725 . Bma01g00729 . . Cmo01g02024 . Cma12g00414 Cma05g00298 Car05g00246 . Cpe11g00247 . Bhi09g02098 Tan01g5006 Cmetu04g2830 . Hepe01g1624 Mch11g0128 . Cla05g01879 Cam05g2011 Cec05g2022 Cco05g2080 Clacu05g2004 Cmu05g1885 Cre05g2006 Lsi08g01333 Csa02g02122 Chy03g01396 Cme04g00479
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000072 8 13 9 10 10 8 15 8 8 8 8 8 15 8 9 12 8 3 15 8 9 9 9 9 7 7 8 15 16 7 287