Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01899 ATGGATGGAGACAATAAGAAGTCTGGTTTCAGGAAAAGAACGAAGCCAAAGGATGATGGGTTTGACTCAGATGTCGATGAGCCAATTGGCTCTCTGCTTAAGTTGAAGAGGTCACGAAACTCTAAAAAAACTAAGTTGAATGTAGATGATGGCGGTGGAAGGGACAAGATGGTTGACAAGAAAGGAGCAACATTGCCAGTGCAAGAGGACTTTGGTGGAATGGATGATACTTTAGCTAGTTTTAGAAAGAAGTTGAAGCGTCCTAAAAAGGTTAGTGGACCTGGAATTGCTAGGGAACAGAGTTCTACTGTAAGCGTGACAGAATCTTTGCATCCATTATCTGTTACATCCAAAGGACAAGGGGACTTAGACACAAGATTGAGACCAGAAAATGGTGAATTAATGGATTGCGAGGAGTCTGATGCATCTGCAAAGATTGATGCAGAAACGAGGTGTGAAGCACCTGGTCTGGAATTAAAAGACATGGAGATGGGCATCTCTAGTAGGAGAAGTGCTCATTGCTCTTTGGATAAACATCTGGATGATTCATTGTCAGCATTTGTCCAAAAGGTTCAGTCTGGTTCAACTAGGAAATCAGCGGTATCTACAACATTTAGACCAGACTGCAAGGACGAGGCTTCTGAAGATAAATTGAGTCCTTTTTGTAGAGCTATTTCCGAGGATCATGAAGCACACTCCATTGTGAGTATTAATTCTTCAGCTAAGCTGGTACAAGTTGTCAAAAAACCAGATTCTGGACTTACTACATCATACTTAATTTCCTGTTCGCATTGCACCAAAGAGAACTGTAATCCAGGTCGAGGACAATGTCATCAAGGGATTAAACACGACCAAGAAGAGGATCCATGCTGTCTCAAGAGTCACGAGAATCCTGACATGAGACCATGCATATCAAATGAAGTTGCCGATAAAGACAGCAAAAACGTTAGTCAAATTAGGGACAATATCCGGGTGCTGGAAAGAAAAGCATCATGTGAAATCAAGAACGTACTAAAACATTGTTCTTGTGGCAATACAATCACGAATAGCCATTTGGCAGAAATGGGTTCTTTTCAGGATGGGCTATGTGAGAATCAAATTAATGAAAATATGTGCAGTTCTTGTCGTCCTCTAGAAAATATAAATGAAAACCATGACCTTTGTGTGGGTGTTTCCAGCAGAGATATTTGTGATGTGGTGGCCCATGAGACCACAGTCAATTTGTCTAAAACAACTCCAGGTGTAGATTGTGAAGGAAAAGGAAGATTACTTGTTAAATATCATGATGAATTGCCAAACTCTATCAATTTCTGTGAAAGTTCTTCCAAAGAAATCTGTAGATCTACTCAAGATTTAGAGATTTCTGATCAATCATTGGACAGAACAACACTCTCCAATCCTCAGTTATCTGCAGGTTTCGATTCAACGAAAGTGGATAAAACTGGCAGTGACTTTGATAATTTAAATACTGGAAATGATGAGCCGAATGACGAAGGTCCTTCTATGCAGAAGGAAAATGCTACAATCTCTAATAGGATTTCAGGTTCAACTACTGTTCAATTTCTCAGATCGCAAAAACCTGGGGCAAAGTATCCGGATGTTTGTCCTAGTGGAAATTTCAGCATGATATCAGACAGTCAACTGGCCAAGGGTTCACTGGAGATGGATGGTCCAAATAATATACTTACTGGCAAAGAGGTTAAAGTATCTTCTCTTGGGTCTTTCACTCCAGATGATAATGACCTTGAGGATGTAATATCTGCTCCTGGAAGTGAAAAAGATTTAAAGCTTTCAGCTTTACAACGTGTAGCACGCAAGACCAAGAAGCCCAGACATGATGACATGGCTTATGAAGGAGATATCGATTGGGAGGTTTTGATTAGTGAGCGTACAGTTGATGGCGATCACTCTTTCAGATCAAGAAAGGATTCTACATCAACAACTTTTACAGAGGCTGAGACTGGTGGTAGGGCTGCAGTGTCTGCAGGGCTTAAGGCACATGCAGTTGGTCTACTTGAGAAGATTAAATTTAAGGATGTGCTAAAGCGCAAAGGTGGGCTTCAAGAGTACATAGCATGCAGGAACCAGATCCTGGGACTTTGGTGTAAAGATGTTACACGCATTTTGCGTCTTGTTGACTGTGGGGTCACCGATACTCCCTCTGTGGATGAACCACCACGTTTCCCCCTTGTTAGGGAGATATATGCATTTCTTAATCTACGTGGTTATATAAATGCGGGGATTGCCTCTGAGAAAGCCAAATCAGAATATGACATTAAATATGAATATGAACTGGGAGAGAAAAAGGTTGGAGATGTTAGTGTTGCTTCTGCTGCTGATTCCGAGGAAGGGGTTTCTGTCATGGTAAAAAATTTCGATGCTTCTAATGCAGAGAATGATGTTTCAGCTGGCTGTGAAGTAATATTGAAGGATGCTGAAGGAAGAAACCCCGTGATTGAAAATGATTTGGATTTACCCAAACCAGCGGAACTCGAACAAGAATTGGTACATGACTTGGAGTACTGTACTCCTGATCGTATACCAGTAAAATTTGTTGGTGACGTTCCAGGTAAAGCTGCCTCACATTTAACTGATCAGTCAAGAAACAGTGGGGGCCCAATCTCCTCTGATGAGTGTGTTGGAGGTGATCAACAACAGCAGAGTAATTCTGAAGTAAAAAAGAAAGTAATTGTGATTGGAGCTGGTCCTGCTGGCTTAACTGCTGCAAAGCACTTGCTTCGTCAGGGCTTTGCTGTCACTGTACTGGAAGCTAGGAATAGGTTAGGAGGTCGTGTTCATACAGATCGCTCCTCTCTTTCTGTTCCTGTAGATCTTGGTGCAAGTATTATTACAGGAGTAGAGGCTGATGTCGCAACCGAAAGAAGACCCGATCCTTCCTCATTGATTTGCTCTCAATTGGGCCTCGAGTTGACTGTATTAAATAGTGACTGTCCCCTTTATGACATCATTACTTGCAAAAAAGTTCCACTAGAAATGGATGAAGCTTTGGAAGCAGAGTATAATAGTCTTCTTGATGACATGGTGTTGCTTGTTGCTCAAAGAGGAGAGCATGCGATGGCTATGTCCCTTGAGGAGGGTTTAGAATATGCTCTTAAGCGACGACGCATGGCTCGAGGAATGGATGTTTGTTCTGAGGAAGAGGTTTTGAGTCCCTTTGAGAGGAGAGTTATGAATTGGCATTTTGCTAACTTGGAGTATGGTTGTGCTGCTATGCTCAAGAAAGTATCTCTTCCTAACTGGAACCAGGATGATCTTTATGGAGGTTTTGGAGGAGCTCATTGTATGATTAAAGGCGGTTATAGCACTGTTGTTGAGTCTCTTGGTGGAGGACTTGATGTTCGCCTAAACCATGTTGTGGCTGATATTTCTTACAGCACCAGTGACGTTGGGTTTAATGGGAATCAGTGTGCAAAGGTGAAAGTTTCCACAACCAATGGTTGCGAGTTTCCTGGAGATGCTGTCCTTATTACTGTGCCTCTTGGGTGCTTGAAAGCAGAAACTATCAAGTTTTCACCACCATTGCCTGAATGGAAACGTCTGTCCATCCAGCGCCTTGGGTTTGGAGTTCTTAACAAAATAGTTCTTGAATTTCCTGAAGTTTTCTGGGATGACTCTGTGGATTATTTTGGGGCAACAGCAGAGGAAACAAAATGGAGAGGGCAGTGTTTCATGTTTTGGAATGTAAGAAAAACAGTTGGTGCGCCAGTTCTCATAGCATTAGTGGTTGGTCAGGCTGCTGTGGAGAGGCAATATATGAGCTCTTCCGACAATGTAAGCCATGCGTTAATGGTCCTTCGCAAACTTTTTGGAGAAGCAGTAGTACCTGATCCAGTTGCATCTGTTGTAACTGATTGGGGAAGAGATCCGTTTAGCTATGGTGCTTACTCATATGTTGCTGTTGGAGCGTCTGGAGAGGACTACGACATTTTAGCAAGACCTGTTGGAAAGTGTTTGTTTTTTGCTGGCGAAGCTACTTGCAAGGAGCATCCTGACACCGTTGGGGGTGCAATGATGAGTGGGCTAAGAGAGGCTGTGCGCATGATTGATATATTGGGTGATGGTTATGATTTCACAGCAGAAGTAGAGGCAATGGAAGCTGCTCAGAGGCAGTCTGAGTGTGAGAATGATGAAGTTGGGGACATAATTACAAGACTCGAGGCTGTTAAGCTTTCTGATGCTCTTTACAAAAGTTCTTTGGATGGTGCCAGGATTTTGACCATAGAAGCTTTACTGCAAGATTTGTTCTTTAGTTCAAAAACGACAGCAGGGAGATTGCATGTGGCAAAAGAGTTGTTGAATTTACCTGCCGAGACGTTGAAGTCCTTTGCAGGGACCAAAGAAGGTCTTACAGTTCTCAACTCATGGATTTTGGACTCAATGGGGAAGGATGGGACTCAACTTCTTCGGCAATGTGTTCGTATTCTTGTGGTAGTTTCAACAGATCTACTTGCAGTTCGCTTATCGGGCATAGGTAAAACCGTCAAAGAAAAGGTATGTGTGCATACAAGCCGTGACATCCGTGCCATTGCAAGTCAGTTGGTTAGCATTTGGCTTGAAGTCTTCCGCAAAGAAAAGGCTGCTAATGGGGGGCTAAAACTCTCTAAGTCGGTTTCTGCTGTAGAATTATTGAAGAGGAAATCTAATAAAGACTCTTCTTCTGGGAAACCTCCTTTGCATGCAAACAACAGCACACTGGATAGTAGAGGCAATTTGTTGACTGCTGCATCAGCTACAATGCCCTTGCAGTCTGATGTCAATATGAAAAACGATAATAGCAAACAATTGAAATTTGAATTGGAAAATTCATCGAAATCAGATATCAGTTCATCAAGGTCAAGGGGTTCATTTGGAAAGCAGGATGCAGAGATGGAAGACAACATTGCTATGACAGAAGAAGAGGAGGCTGCCTTTGCTGCTGCTGAGGCAGCACGTGCAGCCGCACTTGCAGCTGCGAAGGCCTATGCATCTGCTGAAGCCAAGAGTGCGATGCAGCTCCCCAAAATCCCCTCCTTTCACAAATTTGCTAGACGGGAGCATTATGCTCAAATGGATGAGTGTGAGTATAAAAAGAAGTTGTCTGGCAGTGTGCTGGGAAGGCAAGATTGTATATCCGAAATAGATTCAAGAAATTGCAGGGTCAGGAACTGGTCTGTGGAATTTTCTGCTGCTTGTGTTAATCTTGAAAGTTCACGGATGTCCGCAGATAACCTTTCGCAAAGAAGCCATTCAAATGAGATTGTTAGCCAATTAAACTTTAGGGAGCACTCTGGTGAAAGTGCTCCTGTGGATAGCAGTATATACACAAAAGCTTGGGTTGATACAGCTGGTAGTGTTGGAATGAAAGATTATCACGCTATTGAGAGATGGCGCACTCAAGCAGCTGCAGCTCATGTAAATGATGAGGAGGATTCAAACACGAATTGGCATAAACCCACGTGGAATAATGATCAAATAGCAAATGAGAGCTCAATATCACAAGTGACAATCAACAAGGAGCCCATGAGAAACCATCATCGTGGGGCCGACAGAATTAAGCAGGCCGTAGTTGATTATGTTGCATCACTCTTGATGCCCCTTTACAAAGCAAGGAAAATTGACAAGGATGGATACAAGTCAATTATGAAGAAAAGTGCAACCAAGGTCATGGAACAGGCGACTGATGCAGAGAAAGGCATGACTGTTTCTGAGTTTCTTGATTTCAAGCGTAGGAACAAGATTCGTGCATTTGTAGACAAATTGATAGAGAGACATATGGCTACAAAGCCAGCAACGAAGTCGTGA 5802 42.67 MDGDNKKSGFRKRTKPKDDGFDSDVDEPIGSLLKLKRSRNSKKTKLNVDDGGGRDKMVDKKGATLPVQEDFGGMDDTLASFRKKLKRPKKVSGPGIAREQSSTVSVTESLHPLSVTSKGQGDLDTRLRPENGELMDCEESDASAKIDAETRCEAPGLELKDMEMGISSRRSAHCSLDKHLDDSLSAFVQKVQSGSTRKSAVSTTFRPDCKDEASEDKLSPFCRAISEDHEAHSIVSINSSAKLVQVVKKPDSGLTTSYLISCSHCTKENCNPGRGQCHQGIKHDQEEDPCCLKSHENPDMRPCISNEVADKDSKNVSQIRDNIRVLERKASCEIKNVLKHCSCGNTITNSHLAEMGSFQDGLCENQINENMCSSCRPLENINENHDLCVGVSSRDICDVVAHETTVNLSKTTPGVDCEGKGRLLVKYHDELPNSINFCESSSKEICRSTQDLEISDQSLDRTTLSNPQLSAGFDSTKVDKTGSDFDNLNTGNDEPNDEGPSMQKENATISNRISGSTTVQFLRSQKPGAKYPDVCPSGNFSMISDSQLAKGSLEMDGPNNILTGKEVKVSSLGSFTPDDNDLEDVISAPGSEKDLKLSALQRVARKTKKPRHDDMAYEGDIDWEVLISERTVDGDHSFRSRKDSTSTTFTEAETGGRAAVSAGLKAHAVGLLEKIKFKDVLKRKGGLQEYIACRNQILGLWCKDVTRILRLVDCGVTDTPSVDEPPRFPLVREIYAFLNLRGYINAGIASEKAKSEYDIKYEYELGEKKVGDVSVASAADSEEGVSVMVKNFDASNAENDVSAGCEVILKDAEGRNPVIENDLDLPKPAELEQELVHDLEYCTPDRIPVKFVGDVPGKAASHLTDQSRNSGGPISSDECVGGDQQQQSNSEVKKKVIVIGAGPAGLTAAKHLLRQGFAVTVLEARNRLGGRVHTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICSQLGLELTVLNSDCPLYDIITCKKVPLEMDEALEAEYNSLLDDMVLLVAQRGEHAMAMSLEEGLEYALKRRRMARGMDVCSEEEVLSPFERRVMNWHFANLEYGCAAMLKKVSLPNWNQDDLYGGFGGAHCMIKGGYSTVVESLGGGLDVRLNHVVADISYSTSDVGFNGNQCAKVKVSTTNGCEFPGDAVLITVPLGCLKAETIKFSPPLPEWKRLSIQRLGFGVLNKIVLEFPEVFWDDSVDYFGATAEETKWRGQCFMFWNVRKTVGAPVLIALVVGQAAVERQYMSSSDNVSHALMVLRKLFGEAVVPDPVASVVTDWGRDPFSYGAYSYVAVGASGEDYDILARPVGKCLFFAGEATCKEHPDTVGGAMMSGLREAVRMIDILGDGYDFTAEVEAMEAAQRQSECENDEVGDIITRLEAVKLSDALYKSSLDGARILTIEALLQDLFFSSKTTAGRLHVAKELLNLPAETLKSFAGTKEGLTVLNSWILDSMGKDGTQLLRQCVRILVVVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSIWLEVFRKEKAANGGLKLSKSVSAVELLKRKSNKDSSSGKPPLHANNSTLDSRGNLLTAASATMPLQSDVNMKNDNSKQLKFELENSSKSDISSSRSRGSFGKQDAEMEDNIAMTEEEEAAFAAAEAARAAALAAAKAYASAEAKSAMQLPKIPSFHKFARREHYAQMDECEYKKKLSGSVLGRQDCISEIDSRNCRVRNWSVEFSAACVNLESSRMSADNLSQRSHSNEIVSQLNFREHSGESAPVDSSIYTKAWVDTAGSVGMKDYHAIERWRTQAAAAHVNDEEDSNTNWHKPTWNNDQIANESSISQVTINKEPMRNHHRGADRIKQAVVDYVASLLMPLYKARKIDKDGYKSIMKKSATKVMEQATDAEKGMTVSEFLDFKRRNKIRAFVDKLIERHMATKPATKS 1933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27128505 27137258 + MELO3C010993.2.1 Cme03g01899 323910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01899 1933 MobiDBLite consensus disorder prediction 1552 1573 - -
Cme03g01899 1933 MobiDBLite consensus disorder prediction 860 888 - -
Cme03g01899 1933 PANTHER FLAVIN MONOAMINE OXIDASE 595 1929 - -
Cme03g01899 1933 MobiDBLite consensus disorder prediction 1 107 - -
Cme03g01899 1933 MobiDBLite consensus disorder prediction 1 33 - -
Cme03g01899 1933 SUPERFAMILY FAD/NAD(P)-binding domain 893 1358 IPR036188 -
Cme03g01899 1933 SUPERFAMILY FAD-linked reductases, C-terminal domain 1193 1304 - -
Cme03g01899 1933 MobiDBLite consensus disorder prediction 42 63 - -
Cme03g01899 1933 ProSiteProfiles SWIRM domain profile. 655 755 IPR007526 GO:0005515
Cme03g01899 1933 SUPERFAMILY Homeodomain-like 657 752 IPR009057 -
Cme03g01899 1933 MobiDBLite consensus disorder prediction 862 888 - -
Cme03g01899 1933 MobiDBLite consensus disorder prediction 1606 1627 - -
Cme03g01899 1933 Gene3D - 896 1353 IPR036188 -
Cme03g01899 1933 MobiDBLite consensus disorder prediction 1608 1623 - -
Cme03g01899 1933 Coils Coil 309 329 - -
Cme03g01899 1933 Pfam Flavin containing amine oxidoreductase 904 1355 IPR002937 GO:0016491
Cme03g01899 1933 Gene3D - 983 1310 - -
Cme03g01899 1933 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 595 1929 - -
Cme03g01899 1933 Gene3D - 655 758 IPR036388 -
Cme03g01899 1933 MobiDBLite consensus disorder prediction 458 510 - -
Cme03g01899 1933 PRINTS Adrenodoxin reductase family signature 918 931 - -
Cme03g01899 1933 PRINTS Adrenodoxin reductase family signature 895 917 - -
Cme03g01899 1933 Pfam SWIRM domain 667 745 IPR007526 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01899 - - - csv:101212190 3518.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01899 Cme-Chr3:27128505 Cme04g00715 Cme-Chr4:8274563 1.22E-85 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1051 . Blo12g00895 Bda01g00502 . . Bpe04g00232 Bma04g00227 Bma01g02351 . . . . . . . . . Bhi04g00234 . . . . . . Cla08g01440 Cam08g1920 Cec08g1496 . Clacu08g1610 . Cre08g1396 . . . . . . . Cme03g01899 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41075 PF01593 Amino_oxidase 2.40E-100 CL0063 Cme TR