Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01900 ATGTCGTCCACCTTCAGCGGCGATGAAACGGCACCCTTTTTCGGCTTCCTAGGCGCCGCTGCAGCTCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACTGCGAAGAGCGGGGTGGGAGTTGCGTCTATGGGAGTAATGAGGCCTGAACTTGTGATGAAGTCAATTGTTCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGTCTTATTATTGCTGTGATTATTAGTACAGGGATTAACCCTAAGGCCAAATCTTATTACCTCTTCGATGGTTACGCACATCTCTCCTCTGGGCTTGCTTGTGGACTTGCCGGTCTGTCCGCTGGCATGGCTATCGGGATCGTTGGTGATGCTGGTGTTAGAGCCAATGCACAGCAGCCTAAGCTTTTTGTAGGGATGATTCTTATTTTAATTTTTGCCGAAGCTTTGGCACTCTATGGACTTATTGTGGGCATCATTCTCTCTTCCCGAGCTGGTCAGTCAAGAGCCGATTGA 498 49.2 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27140020 27142382 + MELO3C010992.2.1 Cme03g01900 323911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01900 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Cme03g01900 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Cme03g01900 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cme03g01900 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cme03g01900 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cme03g01900 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cme03g01900 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Cme03g01900 165 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Cme03g01900 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Cme03g01900 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Cme03g01900 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Cme03g01900 165 Gene3D - 11 162 IPR035921 -
Cme03g01900 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cme03g01900 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01900 Cme-Chr3:27140020 Cme06g00382 Cme-Chr6:2410531 1.92E-81 dispersed
Cme03g01900 Cme-Chr3:27140020 Cme03g01656 Cme-Chr3:25321473 7.58E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01900 K02155 - pvy:116145974 288.885