Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01901 ATGACCATAAATCGTTTGCGGATTTCAAGTTCCTTTGCGAAAATGGCGGAAGAGATCAGTAAGGCCGGACTCGGGACTTCCACTTCTGCCTCTGAGACCGCCAAATCCAGATCTCTTTGGCCCTCTCTTCTCCGTTGGATTCCTACCTCCACCGATCATATCATCGCCGCCGAAAAGCGACTGCTCTCTCTCGTCAAGACTCCATATGTCCAAGAACGGGTTAATATTGGTTCTGGCCCGCCAGGATCCAAAGTTAGGTGGTTTCGCTCTTCGAGTGATGAGCCTAGGTTTATCAACACCGTGACATTCGAAAGCAAACCTGAGTCTCCGACCCTTGTAATGATTCATGGTTATGCTGCTTCTCAAGGATTCTTCTTCCGCAATTTTGATGCTCTTGCCAGTCGCTTCCGGGTCATTGCCGTCGATCAACTTGGGTGGGGAGGATCTAGCAGGCCTGATTTTACGTGCAAAAGTACAGAAGAAACTGAAGCATGGTTTATAGATTCATTTGAAGAGTGGCGAAAAGCAAAAAACATCAGTAATTTTATTCTACTTGGACACTCATTTGGTGGATACGTTGCGGCTAAATATGCTCTTAAGCATCCTGAGCACATCAACCACCTAATTTTAGTGGGACCTGCTGGATTTTCTTCAGAGTTAGATGCCAAGTCTGAGTGGATTACAAAGTTTAGAGCTACTTGGAAAGGAGCGGTTTTGAGTCATTTGTGGGAGTCAAATTTTACTCCACAGAAGCTTGTTAGGGGTCTGGGCCCTTGGGGACCAGATCTTGTTCGCAGATATACAAGCTCTAGGTTTGGGACATACTCAATCGGGGACATATTGAATGATGAAGAATCCACATTGTTATCAGATTATGTATATCACACGTTAGCAGCCAAGGCAAGTGGAGAATTGTGCTTGAAATACATATTTGCATTTGGTGCATTTGCTCGGATGCCACTTCTACAGAGTGCATCTGAATGGAAAGTTCCTACAACATTTATATACGGTTTTCAAGATTGGATGAACTATCAAGGCGCACAAGAAGCTCGCAAGAGTATGAAGACACCGTGCGAAATATTACGGGTTCCTCAGGCTGGTCACTTTGTGTTCATAGACAACCCTAGTAGTTTTCACTCGACCGTCTTCTACGCGTGTCGCAGATTCCTCTCCTCCGAACCCGATAAAGAATCTTTACCAGAAGTAATACTCATCGATGGGATGTATCAGTATTGGAGGTCATATCGAATCTAA 1254 44.82 MTINRLRISSSFAKMAEEISKAGLGTSTSASETAKSRSLWPSLLRWIPTSTDHIIAAEKRLLSLVKTPYVQERVNIGSGPPGSKVRWFRSSSDEPRFINTVTFESKPESPTLVMIHGYAASQGFFFRNFDALASRFRVIAVDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNISNFILLGHSFGGYVAAKYALKHPEHINHLILVGPAGFSSELDAKSEWITKFRATWKGAVLSHLWESNFTPQKLVRGLGPWGPDLVRRYTSSRFGTYSIGDILNDEESTLLSDYVYHTLAAKASGELCLKYIFAFGAFARMPLLQSASEWKVPTTFIYGFQDWMNYQGAQEARKSMKTPCEILRVPQAGHFVFIDNPSSFHSTVFYACRRFLSSEPDKESLPEVILIDGMYQYWRSYRI 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27147047 27151383 + MELO3C010990.2.1 Cme03g01901 323912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01901 417 Gene3D alpha/beta hydrolase 96 388 IPR029058 -
Cme03g01901 417 SUPERFAMILY alpha/beta-Hydrolases 101 382 IPR029058 -
Cme03g01901 417 PRINTS Epoxide hydrolase signature 135 150 IPR000639 GO:0003824
Cme03g01901 417 PRINTS Epoxide hydrolase signature 198 211 IPR000639 GO:0003824
Cme03g01901 417 PRINTS Epoxide hydrolase signature 330 346 IPR000639 GO:0003824
Cme03g01901 417 PRINTS Epoxide hydrolase signature 363 385 IPR000639 GO:0003824
Cme03g01901 417 PANTHER RE40534P-RELATED 13 393 - -
Cme03g01901 417 PANTHER BNAA01G13630D PROTEIN 13 393 - -
Cme03g01901 417 Pfam alpha/beta hydrolase fold 110 375 IPR000073 -
Cme03g01901 417 PRINTS Alpha/beta hydrolase fold signature 135 150 IPR000073 -
Cme03g01901 417 PRINTS Alpha/beta hydrolase fold signature 184 197 IPR000073 -
Cme03g01901 417 PRINTS Alpha/beta hydrolase fold signature 198 211 IPR000073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01901 - - - csv:101208838 807.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01901 Cme-Chr3:27147047 Cme09g01881 Cme-Chr9:22941579 4.27E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1048 . . . . . . . . Cmo05g00292 Cmo12g00376 . . . Car12g00402 . . Cpe07g00381 Bhi04g00231 . . . Hepe10g0128 . . Cla08g01442 Cam08g1923 Cec08g1498 Cco08g1634 Clacu08g1613 . Cre08g1399 . . Cone17ag1385 Cone20ag0096 . . . Cme03g01901 Blo17g00754 Blo18g00786 Bda08g01233 Bda01g01523 Bpe02g01720 Bpe05g00128 Bma01g00736 Bma05g00154 . . . Cma12g00426 Cma05g00286 Car05g00236 . Cpe11g00237 . . . . . . . . . . . . . . . Lsi08g01344 Csa02g02111 Chy03g01405 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009164 2 1 2 2 2 0 1 1 0 1 0 0 0 1 1 1 0 2 1 0 1 1 1 1 1 1 1 5 3 1 34