Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01903 ATGGGAGGGGAAGAGCTAATAAAAGGTGTCATTAACAATTCAAATGGTCTTGAAGAGACAATTCGTGTTTCTATTAGGTTAAGACCATTGAATGAGAAGGAATTAATGAAAAATGACTCATCCGATTGGGAATGTCTCAACAGCAACTCCGTTATGTTCAGAAGTACATTGCCCGAACGCTCTTTGTTTCCCCACTCTTACACGTTTGATAGAGTATTTGGAATTGATAGTACAACAAAACAAGTTTACGAGGAAGGGGCCAAAGAAGTTGCTCTCTCTGTGGTCAATGGGATTAATTCAACAATTTTTGCATATGGGCAAACAAGCAGTGGAAAGACTTTCACAATGAATGGTGTCACTCAATATTCTGTGGCAGACATTTATAGTTACATAGAGTCGCATCAAGACAGAGAATTTGTGCTGAAGTTTTCAGCAATTGAGATATATAATGAAGCTGTTAAAGATCTCCTTAGCTTAGAAAATGTTCCACTCAGACTGCTCGATGATCCTGAGAAAGGAACTGTTGTTGAGAAACTTACAGAAGAGATCTTGAAAGACAGGAATCATCTCCAAGAGCTTATTTCCTTCTGTGAAGAATCACTAAGGAAAATTTCTGGGAATGCGAGCGGGACAGGTTCATACCAGCTACACTTATACTTAGTTCAAAGAAAGATAGGGGAGACGTCTCTTAATGAAACTAGCTCCAGATCACATCAAATCCTAAGACTAACAATTGAAAGCTCCGCTCGCAAATTCAAGAAGTCCGAAAGTTCAAGCACTCTCACAGCTACAGTGAATTTTGTTGACCTTGCGGGCAGTGAACGTGCTTCTCAAACAAATTCTGGTGGTACGAGACTGAAAGAGGGTTGCCACATCAACCGTAGTTTGCTGACTTTGGGAACGGTTATTCGCAAATTAAGCAAGGGAAGGAATGGACACATACCTTATAGAGACTCGAAGCTGACACGCATACTGCAGAATTCTCTAGGCGGTAACGGTCGAACAGCGATCATTTGTACTATGAGTCCTGCACGTAGCCATGTTGAACAATCGAGAAATACTTTGCTATTTGCTACTTGTGCAAAAGAAGTGAGTACAAATGCACATGTGAATGTGGTAGTCTCAGATAAGGCATTGGTGAAACAGTTGCAAAAAGAATTGGCTAGACTTGAGAGTGAGATGAAGAACTTAAAACCACTTCCTCTCAAAGGTGATTCTACTTCCTTATTGAAAGAGAAAGAACTTGTAATCGAACAGATGGACAAACAGATTAAGGAATTGACTCGACAGCGCGATCTTGCTCAATATCGAATCGAGAACTTGTTGCATTCGGTTGGAGAAGATAGGATATTTAAGTTAAGTGAAAGTACAGTAAATACAATACCAGATCTAGTTGATCTAGATCTAGATCTACGTTCTGATGACTCAAGTTTCAAAGCTTTTGATGAGTCAAGTCTCAAAACTTTTGACACATTTACTGCACAAGAAGAGAATAGCCCTCACAAGATTGATCCTCTATTCACTATGAATCATGAGGACGATTTTCTACTAGATAGCAGTACTCCTGAATTGGCTGGACCTGATCCTTATCAGGACTGGGAAGAGATTGCCGAACGCGTTCATGCAAATTCCGAAGATGGGTGTAAGGATGTTCAATGTATTGAACTGGAAGAATCAAAAGAATCAGTAAATGAAAATGGTGATTTAACTTTAGCTACATTGGAAGACAATGAAAGGCAGATGATTAGTAGTTTTGATAATCCAGAGACATCCCCTCAAAGGAAGAATAAGGAGATAATTCCAATCAACAAAGGTCATACTTATGATGGATTGATTCAAAAAGCTTCTGAGATGGAGAAAACATTGAATTGTATAGTAAATCTTTATCCTTCTGAGCAATCTTTCAGCTCAATCGAAGCAGCGAAGCAAAAGTTAAAGTTGGCAAGAAGCAAAAGTTGTTTGACTGTTCTAATGACCATTCCACCTTCTACTTTGATTGAAAAGGTAGAGGATGATAAGAAAACTCGAAGTATTGGATCTGATGTGAACTTCTCTGGAAAAGCAGAAGGTAGTCGAAGAAGGCGCGGTTTAAGCTGTGGAATTTTGGAGGCAAATTTGGACTTCAAGGACTCACAGTCTGTATGTAGTCGATGTTCGGATACAAAAACTTTACAAATAATAGATGAAGATGATGATGATAATACTAGTGTTCTCAACTTTGCTACTGGAAAAAGAGGAAAGAGCAAAAATCGGATAAAGAAGCGATCTGGTTCGAGGTTGGGGAGGGTCTCTAAAAAGGAAGAACCTAAAGAAACCACACAAGAAGTTCACACGGAAGAGGAGAAAGAACTTCAGGCTCATTCTGAGTGGATGCTTGAGTTTGAAGGTCAACAAAGAGACATAATCGAGCTTTGGGATGCTTGCAATGTACCATTGGTGCACAGATCTTATTTCTTCATCCTTTTTAAAGGAGACCCTTCTGATGCTGTATACATGGAAGTAGAGCTTAGAAGGTTGTTTTTTATAAGGGAAGCCATTTCTCGATCAGCTAATGGATCAGGAAGGGGTGACACCGTCACGCAAACTTCAAGAGTTCCATCTATGACAACTTTTAACATTCCATATCCATATCTGGCATTTGCTTATGAAACAACACATCAACACAGCTTGAAGGCTCTAAACCGCGAAAGAGAAATGTTGGCGAGGCGAATGAAGAAGAAGTTCTCAGCGAAAGAAAGAGACGCCCTTTACGTGAAGTGGGGTATTGACTTGAAAACGAAGCAACGAAGCATACAAGTGGCACGAATGTTATGGTCGAGAACGAAGGATTTCGACCATATAAACGAAAGTGCTGCCCTTGTAGCAAAGCTGATTGGATTTGTGGAACCTAATCAGGTTTCTAGGGAAATGTTTGGGCTATCCTTTTCACTCCAATCCTTAGACCACAGGTCTTTTCCATGGAAAAGAAACATGTCTCTTCCTTTTTGA 2988 39.83 MGGEELIKGVINNSNGLEETIRVSIRLRPLNEKELMKNDSSDWECLNSNSVMFRSTLPERSLFPHSYTFDRVFGIDSTTKQVYEEGAKEVALSVVNGINSTIFAYGQTSSGKTFTMNGVTQYSVADIYSYIESHQDREFVLKFSAIEIYNEAVKDLLSLENVPLRLLDDPEKGTVVEKLTEEILKDRNHLQELISFCEESLRKISGNASGTGSYQLHLYLVQRKIGETSLNETSSRSHQILRLTIESSARKFKKSESSSTLTATVNFVDLAGSERASQTNSGGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPYRDSKLTRILQNSLGGNGRTAIICTMSPARSHVEQSRNTLLFATCAKEVSTNAHVNVVVSDKALVKQLQKELARLESEMKNLKPLPLKGDSTSLLKEKELVIEQMDKQIKELTRQRDLAQYRIENLLHSVGEDRIFKLSESTVNTIPDLVDLDLDLRSDDSSFKAFDESSLKTFDTFTAQEENSPHKIDPLFTMNHEDDFLLDSSTPELAGPDPYQDWEEIAERVHANSEDGCKDVQCIELEESKESVNENGDLTLATLEDNERQMISSFDNPETSPQRKNKEIIPINKGHTYDGLIQKASEMEKTLNCIVNLYPSEQSFSSIEAAKQKLKLARSKSCLTVLMTIPPSTLIEKVEDDKKTRSIGSDVNFSGKAEGSRRRRGLSCGILEANLDFKDSQSVCSRCSDTKTLQIIDEDDDDNTSVLNFATGKRGKSKNRIKKRSGSRLGRVSKKEEPKETTQEVHTEEEKELQAHSEWMLEFEGQQRDIIELWDACNVPLVHRSYFFILFKGDPSDAVYMEVELRRLFFIREAISRSANGSGRGDTVTQTSRVPSMTTFNIPYPYLAFAYETTHQHSLKALNREREMLARRMKKKFSAKERDALYVKWGIDLKTKQRSIQVARMLWSRTKDFDHINESAALVAKLIGFVEPNQVSREMFGLSFSLQSLDHRSFPWKRNMSLPF 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27157282 27162663 - MELO3C010988.2.1 Cme03g01903 323914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01903 995 MobiDBLite consensus disorder prediction 761 780 - -
Cme03g01903 995 PRINTS Kinesin heavy chain signature 228 245 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme03g01903 995 PRINTS Kinesin heavy chain signature 97 118 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme03g01903 995 PRINTS Kinesin heavy chain signature 314 335 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme03g01903 995 PRINTS Kinesin heavy chain signature 264 282 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme03g01903 995 SMART kinesin_4 18 372 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme03g01903 995 CDD KISc_CENP_E 20 364 - -
Cme03g01903 995 Pfam Domain of unknown function (DUF3490) 793 865 IPR021881 -
Cme03g01903 995 Pfam Domain of unknown function (DUF3490) 883 977 IPR021881 -
Cme03g01903 995 PANTHER CENTROMERE PROTEIN E 16 205 - -
Cme03g01903 995 PANTHER CENTROMERE PROTEIN E 221 866 - -
Cme03g01903 995 Coils Coil 373 400 - -
Cme03g01903 995 PANTHER KINESIN-LIKE PROTEIN KIN-7J 883 992 - -
Cme03g01903 995 Gene3D Kinesin motor domain 11 395 IPR036961 -
Cme03g01903 995 ProSiteProfiles Kinesin motor domain profile. 20 364 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme03g01903 995 Pfam Kinesin motor domain 26 200 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme03g01903 995 Pfam Kinesin motor domain 222 364 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme03g01903 995 PANTHER CENTROMERE PROTEIN E 883 992 - -
Cme03g01903 995 ProSitePatterns Kinesin motor domain signature. 263 274 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cme03g01903 995 MobiDBLite consensus disorder prediction 746 780 - -
Cme03g01903 995 Coils Coil 410 444 - -
Cme03g01903 995 MobiDBLite consensus disorder prediction 746 760 - -
Cme03g01903 995 PANTHER KINESIN-LIKE PROTEIN KIN-7J 16 205 - -
Cme03g01903 995 PANTHER KINESIN-LIKE PROTEIN KIN-7J 221 866 - -
Cme03g01903 995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 389 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01903 K11498 CENPE; centromeric protein E - csv:101212680 1716.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01903 Cme-Chr3:27157282 Cme07g01645 Cme-Chr7:22161113 0 dispersed
Cme01g01338 Cme-Chr1:16769128 Cme03g01903 Cme-Chr3:27157282 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1046 . . . . . . . . Cmo05g00291 Cmo12g00378 . . . Car12g00404 . . Cpe07g00383 Bhi04g00228 . . . . . . Cla08g01443 Cam08g1924 Cec08g1499 Cco08g1635 Clacu08g1614 . Cre08g1400 . . Cone17ag1382 . . . . Cme03g01903 . Blo18g00788 . . . . Bma01g00738 . . . . Cma12g00427 Cma05g00285 Car05g00235 . Cpe11g00236 . . . . . . . . . . . . . . . Lsi08g01346 Csa02g02109 Chy03g01407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008666 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 1 1 32