Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01907 ATGAAGATTCAGTGTGATGTTTGTGAAAAAGGGGATGCGGCGGTGTTCTGCACGGCGGATGAGGCGGCGCTCTGTGATCTTTGTGATCACCGTGTCCACCATGCTAATAAGCTTGCTTCGAAGCACCGACGGTTTTCTCTGCTCCGTCCTGATGCAGGGGAGGCTCCCGTGTGCGATGTGTGCAAGGAGCGGCGAGGGTTTTTGTTTTGTCAACAAGATAGAGCGATTCTGTGTAGAGAGTGCGATGATCCAATTCATTCCGCTAATGAACTCACTAAGAAGCACGATAGGTTTCTTCTAACTGGGATTAAGCTTTCCGCCAGCGCTGCTCTGTATGCGCCACCTCCATCCGGCGAGAAACAAATTGAGAGTGGTGGTCGTGTTGTTTCTGCATCTAAGTCAAAGGGGTCTGTCAAGAAAGTGGCTGCGGTTTCCAAGGTTCCAACGATATGCACTCCAAATGTTTGTGTTAATGCCCCAACGAACATAACTCCAGCGGCAGTAGTGAACAAGGGGGGTGGAGGTCAGATTGCGACCGGCGGAGGTGGATCGGCGAGTAGCATATCGGAGTATTTGATGGAGACGCTTCCTGGGTGGCACTTCGAAGATTTTCTTGATTCTTCTGTCTCTCCCCCTTTTGTGGAGGTTGGTTTGTCACTGTTACTGTTACTATTTGTATGTGAAGTTGATAATCATAAAGTTTGA 705 49.22 MKIQCDVCEKGDAAVFCTADEAALCDLCDHRVHHANKLASKHRRFSLLRPDAGEAPVCDVCKERRGFLFCQQDRAILCRECDDPIHSANELTKKHDRFLLTGIKLSASAALYAPPPSGEKQIESGGRVVSASKSKGSVKKVAAVSKVPTICTPNVCVNAPTNITPAAVVNKGGGGQIATGGGGSASSISEYLMETLPGWHFEDFLDSSVSPPFVEVGLSLLLLLFVCEVDNHKV 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27183411 27185517 + MELO3C010985.2.1 Cme03g01907 323918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01907 234 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 210 - -
Cme03g01907 234 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cme03g01907 234 SMART bboxneu5 53 100 IPR000315 GO:0008270
Cme03g01907 234 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270
Cme03g01907 234 CDD Bbox1_BBX-like 57 100 - -
Cme03g01907 234 CDD Bbox1_BBX-like 5 47 - -
Cme03g01907 234 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Cme03g01907 234 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 210 - -
Cme03g01907 234 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cme03g01907 234 Gene3D Classic Zinc Finger 1 96 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01907 Cme-Chr3:27183411 Cme11g00162 Cme-Chr11:1739205 8.17E-47 dispersed
Cme01g00281 Cme-Chr1:2119987 Cme03g01907 Cme-Chr3:27183411 1.15E-53 transposed
Cme07g01351 Cme-Chr7:19039927 Cme03g01907 Cme-Chr3:27183411 1.82E-36 transposed
Cme11g02456 Cme-Chr11:31278052 Cme03g01907 Cme-Chr3:27183411 2.06E-37 transposed
Cme01g01353 Cme-Chr1:16917918 Cme03g01907 Cme-Chr3:27183411 8.36E-55 wgd
Cme03g01907 Cme-Chr3:27183411 Cme08g00909 Cme-Chr8:5976207 4.65E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41076 PF00643 zf-B_box 3.60E-06 No_clan Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01907 - - csv:101209573 368.622