Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01908 ATGGCTGGGTTCTTCTATCTAGGAGGAGGGAGAGAAGGCCCACCAAACAAACAAGAAGAAGATGAAGAAGAAAGAGAACAGAATTTGTTTTTGTACAGAAATGATCAAGAGATCTACAACAAGGGTTTTGAGATATGGCCTCAACAATACAACAACAACAACAATCATCAACATCAACAACCAAATCCCTCTCTTCCAAATCACTTATCATTTGGTGTTGGTCCCAGCCGCCGCAGCTTCATGATCAACGACCCTTCCGATGAGCCTTCTAGATCAGCTTTTACCCTCATGCGCCCAGCTGCTGCTGCTTTTGCCGCCGCAGCCGCTTCTGCTGCTACTGCTGGCGGCATGAATTGTCAAGATTGCGGCAACCAAGCTAAGAAGGATTGTGCTTATTTGCGGTGTAGAACTTGCTGCAAGAGCCGAGGGTTTCAGTGTCAGACTCACGTGAAAAGCACGTGGGTTCCCGCTGCTAAACGCCGTGAGAGACAACAGCAAATTGCTGCTTTACAACACCAGCAACAACAAGAACAGTTCCGTGGCGGTGACAATTCTAAAAGACTAAGAGAAACTCAAACCACCACCGCTGTCGCTGCGGCTCCCACCGCCTCCGCCTCCGCTTGCCCTCGTCTGCCCTCCATCACGTCAGGGTTAGAACTGGCGCAATTTCCATCAGAAGTGAACTCACCGGCGGTATTTCGGTGCGTAAAAGTAAGTGCAATGGACGATGCAGATGAAGAGTTTGCTTATCAGACGGCTGTTAATATCGGTGGCCACGTGTTCAAAGGAATTCTCTACGATCAAGGTCCTGAACTCCGTTACACCGCAGCTGGTGAGAGCTCTTCCGGTCACGGCGGAGACGGATCAACACACCCACTTAACCTAATTACTGGTCCCACTTCCACCACGACCTCCGCCGCAACTAGTACCAACCCCGCCGCCGCCGCCGCCTCCACCGCGCCGTTGCTTGATCCTTCTATATATCCAGCTCCTCTCAATGCATTTATGGCTGGTACGCAGTTCTTCCCACCCTCAAGGTCATGA 1044 50.96 MAGFFYLGGGREGPPNKQEEDEEEREQNLFLYRNDQEIYNKGFEIWPQQYNNNNNHQHQQPNPSLPNHLSFGVGPSRRSFMINDPSDEPSRSAFTLMRPAAAAFAAAAASAATAGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQHQQQQEQFRGGDNSKRLRETQTTTAVAAAPTASASACPRLPSITSGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPELRYTAAGESSSGHGGDGSTHPLNLITGPTSTTTSAATSTNPAAAAASTAPLLDPSIYPAPLNAFMAGTQFFPPSRS 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27196012 27197745 + MELO3C010984.2.1 Cme03g01908 323919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01908 347 MobiDBLite consensus disorder prediction 282 312 - -
Cme03g01908 347 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 118 160 IPR006510 -
Cme03g01908 347 MobiDBLite consensus disorder prediction 276 312 - -
Cme03g01908 347 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 344 - -
Cme03g01908 347 Pfam Domain of unknown function (DUF702) 116 271 - -
Cme03g01908 347 MobiDBLite consensus disorder prediction 1 26 - -
Cme03g01908 347 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 344 IPR007818 GO:0003700|GO:0006355
Cme03g01908 347 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 222 270 IPR006511 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01908 Cme04g00500 CCT
Cme03g01908 Cme04g00500 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00284 Cme-Chr1:2128582 Cme03g01908 Cme-Chr3:27196012 3.77E-79 dispersed
Cme03g01908 Cme-Chr3:27196012 Cme07g01691 Cme-Chr7:22460299 1.62E-54 dispersed
Cme03g01908 Cme-Chr3:27196012 Cme04g00500 Cme-Chr4:4044534 1.01E-91 wgd
Cme03g01908 Cme-Chr3:27196012 Cme08g00899 Cme-Chr8:5915372 2.14E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41077 PF05142 DUF702 1.60E-67 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01908 - - cmo:103488016 590.497