Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme03g01909 | ATGGGGCAAGTGCACGGAAGTCAACTCTTGCAGACGATTGGTCATCAATATGAGCTGTGGAATCTTCTGGTAAAGAAGGAAAAATCTGTTTACCACACTTTGAATATGCTCAGTGTTGATGTTACAAAGAAATGCCTTGTAGGTGAAGGATGGTGCCCTGTTTTTGCAACAAATCAGATTCAAAGTGTGATGCAAAAGGCAACCCTCGACAGCAAATCACAAATCGAGGCTATCTTTCATGTTTTGGATACAAAGGAAGCGCCACCAACATATTTCCGCACAAACAAATTTACTTCTTCGTTCCAAGAAATCGTGGATGCATATGGGGTTGCTAAGTATCAGGAAGCAAATCCTGGAGTCTACACTATTGTCACCTTCCCTTTCCTATTTGCTGTAATGTTTGGTGATTGGGGCCATGGAATATGCTTGTTGCTGGCAACATTATATTTTATAATAAGGGAGAAGAAATTTTCCGGCCAGAAACTTGGAGATATCGTTGAAATGACTTTTGGGGGTCGTTATGTTATCATGATGATGGCACTTTTTTCGATCTACACAGGACTGATTTACAATGAATTCTTTTCTGTCCCATTTGAACTGTTTGGGCCTTCTGCATACGGTTGTCGTGATACTTCATGCAGGGATGCTACTTCCATTGGTTTAGTAAAGGTTCGTGATACATATCCATTTGGTGTGGATCCTAAGTGGCATGGCACGCGAAGTGAGTTACCTTTTCTCAACTCTTTGAAGATGAAGATGTCTATCCTACTGGGAGTAGCTCAAATGAATCTAGGAATTATACTGAGCTACTTCAATGCAAAATTCTTTGGAGAAAGCATTAACATCTGGTACCAATTTGTTCCCCAGATGATATTCTTGAACAGCTTATTTGGTTACCTCTCACTTCTCATAATTGTAAAGTGGTACTCTGGATCTCAAGCTGATCTGTATCACGTAATGATATATATGTTCTTGAGTCCGACTGATGATCTAGGTGAAAATCAGCTTTTCCCAGGACAGAAGTTCCTTCAGCTTCTGTTACTTCTGTCTGCCCTCACTGCCGTGCCATGGATGTTATTTCCCAAGCCTCTTCTTTTGAAGAAACAAAATGAAGAAAGGCACCAAGGACAATCCTACTCCGTACTTCACTGTACAGATGACAATCACGAAATAGAACCACACCACGGTTCCCACGGCCATGAGGAGTTCGATTTGAGTGAGGTTTTTGTACACCAACTTATACATACCATAGAATTTGTTCTTGGTGCAGTCTCGAACACAGCATCCTATCTTCGTCTATGGGCCCTCAGTCTAGCGCATTCGGAGTTGTCGAGTGTATTTTACGACAAGGTTCTACTCTTAGCTTGGGGGTTCAATAGTTTGATCATTCGAATAGTAGGAATGGCCGTTTTCATTTTTGCAACTGTGGGAGTTTTACTAATTATGGAAACACTAAGCGCATTCCTACACGCCTTGAGGCTCCACTGGGTGGAGTTTCAGAACAAATTCTATGCTGGAGATGGATTCAAATTTTCCCCTTTCTCCTTTTCGTTGCTTCGGGAGGAGGATGAGTGA | 1575 | 41.71 | MGQVHGSQLLQTIGHQYELWNLLVKKEKSVYHTLNMLSVDVTKKCLVGEGWCPVFATNQIQSVMQKATLDSKSQIEAIFHVLDTKEAPPTYFRTNKFTSSFQEIVDAYGVAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLATLYFIIREKKFSGQKLGDIVEMTFGGRYVIMMMALFSIYTGLIYNEFFSVPFELFGPSAYGCRDTSCRDATSIGLVKVRDTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNAKFFGESINIWYQFVPQMIFLNSLFGYLSLLIIVKWYSGSQADLYHVMIYMFLSPTDDLGENQLFPGQKFLQLLLLLSALTAVPWMLFPKPLLLKKQNEERHQGQSYSVLHCTDDNHEIEPHHGSHGHEEFDLSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGFNSLIIRIVGMAVFIFATVGVLLIMETLSAFLHALRLHWVEFQNKFYAGDGFKFSPFSFSLLREEDE | 524 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 27216754 | 27220964 | + | MELO3C010983.2.1 | Cme03g01909 | 323920 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme03g01909 | 524 | Pfam | V-type ATPase 116kDa subunit family | 5 | 516 | IPR002490 | GO:0033179|GO:0046961|GO:1902600 | |
| Cme03g01909 | 524 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT A | 1 | 524 | - | - | |
| Cme03g01909 | 524 | PANTHER | VACUOLAR PROTON ATPASES | 1 | 524 | IPR002490 | GO:0033179|GO:0046961|GO:1902600 |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme03g01909 | K02154 | ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a | - | csv:101209817 | 1014.22 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme03g01909 | Cme-Chr3:27216754 | Cme11g01758 | Cme-Chr11:25750228 | 0 | dispersed | |
| Cme01g01362 | Cme-Chr1:16991930 | Cme03g01909 | Cme-Chr3:27216754 | 0 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi18g1033 | . | . | . | . | . | . | . | . | Cmo05g00282 | Cmo12g00383 | . | . | . | Car12g00408 | . | . | Cpe07g00387 | Bhi04g00220 | . | . | . | . | . | . | Cla08g01448 | Cam08g1932 | Cec08g1506 | Cco08g1644 | Clacu08g1622 | . | Cre08g1408 | . | . | Cone17ag1375 | Cone20ag0107 | . | . | . | Cme03g01909 | Blo17g00765 | . | Bda08g01248 | . | . | Bpe05g00122 | . | Bma05g00148 | . | . | . | Cma12g00431 | Cma05g00279 | Car05g00230 | . | Cpe11g00231 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Lsi08g01352 | Csa02g02102 | Chy03g01413 | . |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cme11g01758 | . | 73 | 886 | Primary Pumps ATPases(2) | AT2G28520 | 81.3 | 0.0e+00 | 1342.4 | |
| Cme01g01362 | . | 70 | 873 | Primary Pumps ATPases(2) | AT2G28520 | 63.2 | 1.6e-294 | 1008.8 | |
| Cme03g01909 | . | 2 | 519 | Primary Pumps ATPases(2) | AT2G28520 | 69.3 | 4.2e-215 | 745.0 | |
| Cme01g01362 | . | 66 | 878 | Primary Pumps ATPases(2) | AT2G21410 | 75.8 | 0.0e+00 | 1234.2 | |
| Cme11g01758 | . | 81 | 890 | Primary Pumps ATPases(2) | AT2G21410 | 62.5 | 2.3e-298 | 1021.5 | |
| Cme03g01909 | . | 9 | 524 | Primary Pumps ATPases(2) | AT2G21410 | 76.9 | 1.2e-238 | 823.2 | |
| Cme01g01362 | . | 68 | 878 | Primary Pumps ATPases(2) | AT4G39080 | 77.1 | 0.0e+00 | 1240.3 | |
| Cme11g01758 | . | 81 | 890 | Primary Pumps ATPases(2) | AT4G39080 | 63.4 | 2.6e-297 | 1018.1 | |
| Cme03g01909 | . | 9 | 524 | Primary Pumps ATPases(2) | AT4G39080 | 77.8 | 1.6e-238 | 822.8 | |
| Cme03g01900 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cme06g00383 | . | 28 | 122 | Primary Pumps ATPases(2) | AT4G34720 | 98.9 | 1.9e-38 | 155.6 | |
| Cme06g00382 | . | 28 | 122 | Primary Pumps ATPases(2) | AT4G34720 | 98.9 | 1.9e-38 | 155.6 | |
| Cme03g01900 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Cme06g00383 | . | 2 | 122 | Primary Pumps ATPases(2) | AT1G75630 | 96.7 | 5.2e-50 | 194.5 | |
| Cme06g00382 | . | 2 | 122 | Primary Pumps ATPases(2) | AT1G75630 | 96.7 | 5.2e-50 | 194.5 | |
| Cme03g01900 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.2e-74 | 274.2 | |
| Cme06g00383 | . | 3 | 122 | Primary Pumps ATPases(2) | AT2G16510 | 99.2 | 6.0e-52 | 200.7 | |
| Cme06g00382 | . | 3 | 122 | Primary Pumps ATPases(2) | AT2G16510 | 99.2 | 6.0e-52 | 200.7 | |
| Cme06g00383 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 3.1e-53 | 204.5 | |
| Cme06g00382 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 3.1e-53 | 204.5 | |
| Cme03g01900 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cme03g01656 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.7 | 2.3e-70 | 262.3 | |
| Cme04g00385 | . | 7 | 160 | Primary Pumps ATPases(2) | AT2G25610 | 83.8 | 5.7e-61 | 231.1 | |
| Cme03g01900 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.8e-60 | 227.6 | |
| Cme06g00383 | . | 28 | 122 | Primary Pumps ATPases(2) | AT4G38920 | 98.9 | 5.4e-38 | 154.1 | |
| Cme06g00382 | . | 28 | 122 | Primary Pumps ATPases(2) | AT4G38920 | 98.9 | 5.4e-38 | 154.1 | |
| Cme03g01656 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.8 | 1.9e-71 | 265.8 | |
| Cme04g00385 | . | 1 | 160 | Primary Pumps ATPases(2) | AT4G32530 | 73.7 | 8.7e-64 | 240.4 | |
| Cme12g00230 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 80.2 | 0.0e+00 | 1666.0 | |
| Cme12g00230 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 80.2 | 0.0e+00 | 1669.8 | |
| Cme12g00230 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.8 | 0.0e+00 | 1319.7 | |
| Cme02g00511 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.9 | 1.3e-57 | 219.2 | |
| Cme01g01238 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 4.3e-268 | 920.2 | |
| Cme04g02533 | . | 2 | 109 | Primary Pumps ATPases(2) | AT3G01390 | 79.6 | 3.6e-37 | 151.0 | |
| Cme09g01067 | . | 1 | 376 | Primary Pumps ATPases(2) | AT1G12840 | 83.0 | 5.3e-181 | 630.6 | |
| Cme05g00306 | . | 63 | 323 | Primary Pumps ATPases(2) | AT3G58730 | 81.6 | 8.4e-117 | 416.8 | |
| Cme04g02122 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.9 | 1.3e-207 | 719.2 | |
| Cme03g01900 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.2e-74 | 274.2 | |
| Cme06g00383 | . | 3 | 122 | Primary Pumps ATPases(2) | AT2G16510 | 99.2 | 6.0e-52 | 200.7 | |
| Cme06g00382 | . | 3 | 122 | Primary Pumps ATPases(2) | AT2G16510 | 99.2 | 6.0e-52 | 200.7 | |
| Cme01g01238 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.7 | 1.1e-269 | 925.6 | |
| Cme06g01749 | . | 1 | 176 | Primary Pumps ATPases(2) | AT1G64200 | 77.0 | 6.5e-66 | 247.3 | |
| Cme01g01238 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 9.1e-266 | 912.5 | |
| Cme11g01758 | . | 73 | 886 | Primary Pumps ATPases(2) | AT2G28520 | 81.3 | 0.0e+00 | 1342.4 | |
| Cme01g01362 | . | 70 | 873 | Primary Pumps ATPases(2) | AT2G28520 | 63.2 | 1.6e-294 | 1008.8 | |
| Cme03g01909 | . | 2 | 519 | Primary Pumps ATPases(2) | AT2G28520 | 69.3 | 4.2e-215 | 745.0 | |
| Cme04g01965 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 6.1e-192 | 666.8 | |
| Cme06g01749 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 77.4 | 7.7e-90 | 327.0 | |
| Cme01g02735 | . | 1 | 623 | Primary Pumps ATPases(2) | AT1G78900 | 93.1 | 0.0e+00 | 1172.1 | |
| Cme01g01238 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 4.3e-268 | 920.2 | |
| Cme01g01238 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.7 | 1.1e-269 | 925.6 | |
| Cme01g01238 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 9.1e-266 | 912.5 | |
| Cme09g01067 | . | 1 | 376 | Primary Pumps ATPases(2) | AT1G12840 | 83.0 | 5.3e-181 | 630.6 | |
| Cme05g00306 | . | 63 | 323 | Primary Pumps ATPases(2) | AT3G58730 | 81.6 | 8.4e-117 | 416.8 | |
| Cme06g01749 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 77.4 | 7.7e-90 | 327.0 | |
| Cme06g01749 | . | 1 | 223 | Primary Pumps ATPases(2) | AT3G08560 | 69.5 | 6.5e-76 | 280.8 | |
| Cme06g01749 | . | 1 | 176 | Primary Pumps ATPases(2) | AT1G64200 | 77.0 | 6.5e-66 | 247.3 | |
| Cme02g00511 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.9 | 1.3e-57 | 219.2 | |
| Cme04g02533 | . | 2 | 109 | Primary Pumps ATPases(2) | AT3G01390 | 79.6 | 3.6e-37 | 151.0 | |
| Cme04g02122 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.9 | 1.3e-207 | 719.2 | |
| Cme11g01758 | . | 73 | 886 | Primary Pumps ATPases(2) | AT2G28520 | 81.3 | 0.0e+00 | 1342.4 | |
| Cme01g01362 | . | 70 | 873 | Primary Pumps ATPases(2) | AT2G28520 | 63.2 | 1.6e-294 | 1008.8 | |
| Cme03g01909 | . | 2 | 519 | Primary Pumps ATPases(2) | AT2G28520 | 69.3 | 4.2e-215 | 745.0 | |
| Cme01g01362 | . | 66 | 878 | Primary Pumps ATPases(2) | AT2G21410 | 75.8 | 0.0e+00 | 1234.2 | |
| Cme11g01758 | . | 81 | 890 | Primary Pumps ATPases(2) | AT2G21410 | 62.5 | 2.3e-298 | 1021.5 | |
| Cme03g01909 | . | 9 | 524 | Primary Pumps ATPases(2) | AT2G21410 | 76.9 | 1.2e-238 | 823.2 | |
| Cme01g01362 | . | 68 | 878 | Primary Pumps ATPases(2) | AT4G39080 | 77.1 | 0.0e+00 | 1240.3 | |
| Cme11g01758 | . | 81 | 890 | Primary Pumps ATPases(2) | AT4G39080 | 63.4 | 2.6e-297 | 1018.1 | |
| Cme03g01909 | . | 9 | 524 | Primary Pumps ATPases(2) | AT4G39080 | 77.8 | 1.6e-238 | 822.8 | |
| Cme03g01900 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cme06g00383 | . | 28 | 122 | Primary Pumps ATPases(2) | AT4G34720 | 98.9 | 1.9e-38 | 155.6 | |
| Cme06g00382 | . | 28 | 122 | Primary Pumps ATPases(2) | AT4G34720 | 98.9 | 1.9e-38 | 155.6 | |
| Cme06g00383 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 3.1e-53 | 204.5 | |
| Cme06g00382 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 3.1e-53 | 204.5 | |
| Cme03g01900 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cme03g01900 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.8e-60 | 227.6 | |
| Cme06g00383 | . | 28 | 122 | Primary Pumps ATPases(2) | AT4G38920 | 98.9 | 5.4e-38 | 154.1 | |
| Cme06g00382 | . | 28 | 122 | Primary Pumps ATPases(2) | AT4G38920 | 98.9 | 5.4e-38 | 154.1 | |
| Cme03g01900 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Cme06g00383 | . | 2 | 122 | Primary Pumps ATPases(2) | AT1G75630 | 96.7 | 5.2e-50 | 194.5 | |
| Cme06g00382 | . | 2 | 122 | Primary Pumps ATPases(2) | AT1G75630 | 96.7 | 5.2e-50 | 194.5 | |
| Cme03g01900 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.2e-74 | 274.2 | |
| Cme06g00383 | . | 3 | 122 | Primary Pumps ATPases(2) | AT2G16510 | 99.2 | 6.0e-52 | 200.7 | |
| Cme06g00382 | . | 3 | 122 | Primary Pumps ATPases(2) | AT2G16510 | 99.2 | 6.0e-52 | 200.7 | |
| Cme03g01656 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.8 | 1.9e-71 | 265.8 | |
| Cme04g00385 | . | 1 | 160 | Primary Pumps ATPases(2) | AT4G32530 | 73.7 | 8.7e-64 | 240.4 | |
| Cme03g01656 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.7 | 2.3e-70 | 262.3 | |
| Cme04g00385 | . | 7 | 160 | Primary Pumps ATPases(2) | AT2G25610 | 83.8 | 5.7e-61 | 231.1 | |
| Cme04g01965 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28710 | 94.3 | 5.3e-199 | 690.3 | |
| Cme04g01965 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 6.1e-192 | 666.8 | |
| Cme12g00230 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 80.2 | 0.0e+00 | 1666.0 | |
| Cme12g00230 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.8 | 0.0e+00 | 1319.7 | |
| Cme12g00230 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 80.2 | 0.0e+00 | 1669.8 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0000455 | 4 | 5 | 5 | 3 | 4 | 3 | 5 | 3 | 3 | 3 | 3 | 3 | 6 | 3 | 3 | 5 | 3 | 6 | 6 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 7 | 4 | 4 | 115 |