Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01910 CGTTACAGTTTCTTCGACGCTCACGGAACTGGGCCAATTCGGAACGGAAACGTGGCAGCATTGTTGCCGTTCATTCCGTCGCGATATTTCTCTATTTATTTGTACTCAATTCATACCGCCCAAAAATATCTCATATCTCCGTTCCCTCCCTCAGTCTCAATGGCGCGCTTCAACGCAATCGCTCTCTTCTTCGCTATTCTACTGTCGGCGACGGTAGCTTACGGTGTATTTTCTGATCAAATCGACGGCGACGTAAGCGACGGCGAAGATCTTTTGATTCGTCAAGTCGTCTCCGGTGCTGATGATCGTCTTTTAACCGCGGAACAACGCTTCCAGAACTTCAAACTCAAGTTCGGAAAGACTTACGCCACTGCTGAGGAGCACGATTACAGGTTTCGTGTCTTTAAGGATAACCTCCGCAAAGCGAAGCGCCACCAGAAGCTCGATCCCGACGCTGTCCATGGCGTCACTCGGTTTTCCGACCTTACTGAGTCAGAATTCCGTGAGAATTTCGTCGGATTGAATCGGCTTCGTCTTCCTGCTGATGCTCATCAGGCTCCGATCCTTCCGACTGATAACCTCGCCTCCGATTTCGATTGGCGCGATAAAGGTGCCGTAACGCCGGTCAAAGATCAGGGTTCTTGTGGCTCGTGCTGGTCTTTTAGTGCTGTTGGAGCGCTGGAGGGAGCTAATTTCTTGTCAACTGGAAAGCTTATTAGTCTAAGTGAGCAACAGCTTGTGGATTGTGATCATGAGTGTGATCCGGAGGAAGCTGGTGCATGCGACGCAGGGTGCAACGGGGGACTAATGACTTCAGCTTTTGAGTATATTTTGAAAGCAGGTGGGTTAGAGAGAGAGGAGGATTATCCTTACACCGGCACGGATCGTGGCTCTTGCAAATTCCAAAATGGCAAAATTGCTGCCTCTGCAGCCAACTTCAGTGTCATTTCAAACGATGCTGATCAAATTGCAGCCAACTTGGTCAAGAATGGCCCTCTAGCAATTGGAATCAATGCAGTTTTCATGCAAACATACATGAAGGGAGTTTCATGCCCATACATATGCTCTAAACGAAATTTAGATCATGGAGTTCTCCTTGTAGGGTATGGATCTGCCGGCTTTGCTCCAATACGGTTCAAGGAGAAACCCTATTGGATCATTAAAAACTCGTGGGGCGAAAATTGGGGAGAAAATGGATATTACTTCATTTGCAAGGGCAAGAATGTCTGTGGATCCGAGTCGATGGTCTCCTCCGTGGCTGCGGCTGCCACCCCAAATTGA 1281 48.56 RYSFFDAHGTGPIRNGNVAALLPFIPSRYFSIYLYSIHTAQKYLISPFPPSVSMARFNAIALFFAILLSATVAYGVFSDQIDGDVSDGEDLLIRQVVSGADDRLLTAEQRFQNFKLKFGKTYATAEEHDYRFRVFKDNLRKAKRHQKLDPDAVHGVTRFSDLTESEFRENFVGLNRLRLPADAHQAPILPTDNLASDFDWRDKGAVTPVKDQGSCGSCWSFSAVGALEGANFLSTGKLISLSEQQLVDCDHECDPEEAGACDAGCNGGLMTSAFEYILKAGGLEREEDYPYTGTDRGSCKFQNGKIAASAANFSVISNDADQIAANLVKNGPLAIGINAVFMQTYMKGVSCPYICSKRNLDHGVLLVGYGSAGFAPIRFKEKPYWIIKNSWGENWGENGYYFICKGKNVCGSESMVSSVAAAATPN 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27222643 27227877 - MELO3C010982.2.1 Cme03g01910 323921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01910 426 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 212 223 IPR000169 -
Cme03g01910 426 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 360 370 IPR025660 -
Cme03g01910 426 PANTHER CYSTEINE PROTEASE RD19C-RELATED 84 420 - -
Cme03g01910 426 SUPERFAMILY Cysteine proteinases 108 419 IPR038765 -
Cme03g01910 426 PRINTS Papain cysteine protease (C1) family signature 384 390 IPR000668 GO:0006508|GO:0008234
Cme03g01910 426 PRINTS Papain cysteine protease (C1) family signature 212 227 IPR000668 GO:0006508|GO:0008234
Cme03g01910 426 PRINTS Papain cysteine protease (C1) family signature 362 372 IPR000668 GO:0006508|GO:0008234
Cme03g01910 426 Gene3D Cysteine proteinases 89 420 - -
Cme03g01910 426 CDD Peptidase_C1A 198 419 IPR039417 -
Cme03g01910 426 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 84 420 - -
Cme03g01910 426 SMART pept_c1 194 420 IPR000668 GO:0006508|GO:0008234
Cme03g01910 426 Pfam Cathepsin propeptide inhibitor domain (I29) 111 167 IPR013201 -
Cme03g01910 426 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 384 403 IPR025661 -
Cme03g01910 426 SMART Inhibitor_I29_2 111 167 IPR013201 -
Cme03g01910 426 Pfam Papain family cysteine protease 195 418 IPR000668 GO:0006508|GO:0008234
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01910 K01373 CTSF; cathepsin F [EC:3.4.22.41] - csv:101210316 701.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01910 Cme-Chr3:27222643 Cme11g00159 Cme-Chr11:1709477 0 dispersed
Cme03g01910 Cme-Chr3:27222643 Cme03g01917 Cme-Chr3:27274447 2.42E-58 proximal
Cme01g01363 Cme-Chr1:17009017 Cme03g01910 Cme-Chr3:27222643 1.44E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1031 . . . . . . . . . Cmo12g00384 . . . Car12g00409 . . Cpe07g00388 . . . . . . . Cla08g01449 Cam08g1934 Cec08g1508 Cco08g1647 Clacu08g1624 . Cre08g1410 . . Cone17ag1374 Cone20ag0108 . . . Cme03g01910 Blo17g00766 . . . . . . Bma05g00147 . . . Cma12g00432 . . . . . . . . . . . . . . . . . . . Lsi08g01353 Csa02g02101 Chy03g01414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102