Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01915 ATGGGAGTTCCCGCGTTTCGTCTTGGCTTTTCTGTTCTTTTAGTTTTTGCTTTTGTGCTCTGTGATCTGGGTGTTTGTAATGGTGGAATTACGAGTCGGTTTGTTCGGGATGATGACGCTTCGTCGGATATGCCGCTTGATAGCGATGTCTTTAGGCCTCCTCCTGGTAAAAATGCCCCCCAACAGGTTCATATAACACAAGGGGATTCTGAGGGAAAGAGTGTGATAATCTCTTGGGTTACACCAGATAAACCAGGTTCAAACAGAGTAGTTTATTGGGCTGAAAACAGTGACACTAGAAATCATGCTGAAGGCTATTTTGTTTCCTACAAGTATTTCAACTATACATCTGGTTACATTCATCACTGCACCATTAATGACTTAGAGTATGATACTAAATACTTCTACGTGATTGGATTCGGAAGTCTATCAAGAAGGTTTTGGTTTACAACCCCTCCTAAAGTTGGCCCTGATGTGCCTTATACTTTTGGTCTTATAGGGGATCTTGGTCAAACGCATCATTCTAATAGAACACTTACACACTATGAATTGAACCCAACAAAAGGACAGACCGTGTTGTTCGTTGGGGATTTATCTTATGCAGATCGTTATCCATTCCATGATAACACTAGATGGGACTCATGGGGGAGGTTTGTGGAAAGAAGTACTGCATATCAACCTTGGATTTGGACTGCAGGGAACCATGAACTTGACTCTGCTCCTGAAATTGGTGAAAGTGAACCATTTAAGCCTTATCTCCATCGTTACCGTGTTCCACACAATGCATCAGATGGCTCCTCTCCCCTTTGGTACTCCATTAAAAGAGCTTCAGCTTATATAATCGTCTTGTCCTCTTACTCGTCATTTGTGAAAAGCAGCCCTCAATATAAATGGCTAGCTAATGAGCTGGAGAAGGTAAACAGGGACGAGACACCATGGCTCATAGTTCTTATGCATACTCCAATGTACAGCAGTTATGTCCACCATTACATGGAAGGAGAAAGCATGAGAGTGGTCTTCGAGCCGTGGTTCGTCAAATATAAAGTTGATGTAGTCTTCGCCGGTCATGTTCATGCCTACGAACGATCTGAACGAATATCAAACATCGAATACAATGTCGTAAATGGTTTATGTTCTCCAGCTTATAATATAGAGGCTCCAGTTTATATAACCATTGGAGATGGTGGAAACTCTGAAGGATTAGTATCTGAAATGACTGAACCACAGCCAAAATACTCGGCTTATCGTGAAGCCAGCTATGGACATGGCACATTAGACATAAAGAACAGAACTCATGCCTACTTTGCTTGGCATAGGAACCAAGACGAATATGCTGTAGAAGCCGATTCTTTGTGGCTGCATAATCGAGAATGGATATCAACTAAATTGCCACAATCTTCCGAAATGACTCACCTTTCATCAGCGGCTGCCTGA 1434 42.26 MGVPAFRLGFSVLLVFAFVLCDLGVCNGGITSRFVRDDDASSDMPLDSDVFRPPPGKNAPQQVHITQGDSEGKSVIISWVTPDKPGSNRVVYWAENSDTRNHAEGYFVSYKYFNYTSGYIHHCTINDLEYDTKYFYVIGFGSLSRRFWFTTPPKVGPDVPYTFGLIGDLGQTHHSNRTLTHYELNPTKGQTVLFVGDLSYADRYPFHDNTRWDSWGRFVERSTAYQPWIWTAGNHELDSAPEIGESEPFKPYLHRYRVPHNASDGSSPLWYSIKRASAYIIVLSSYSSFVKSSPQYKWLANELEKVNRDETPWLIVLMHTPMYSSYVHHYMEGESMRVVFEPWFVKYKVDVVFAGHVHAYERSERISNIEYNVVNGLCSPAYNIEAPVYITIGDGGNSEGLVSEMTEPQPKYSAYREASYGHGTLDIKNRTHAYFAWHRNQDEYAVEADSLWLHNREWISTKLPQSSEMTHLSSAAA 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27264118 27267757 + MELO3C010978.2.1 Cme03g01915 323926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01915 477 Pfam Purple acid Phosphatase, N-terminal domain 60 151 IPR015914 GO:0003993|GO:0046872
Cme03g01915 477 SUPERFAMILY Metallo-dependent phosphatases 157 458 IPR029052 -
Cme03g01915 477 PANTHER FE(3+)-ZN(2+) PURPLE ACID PHOSPHATASE 12 11 462 - -
Cme03g01915 477 PANTHER ACID PHOSPHATASE RELATED 11 462 IPR039331 GO:0003993
Cme03g01915 477 Pfam Calcineurin-like phosphoesterase 162 360 IPR004843 GO:0016787
Cme03g01915 477 SUPERFAMILY Purple acid phosphatase, N-terminal domain 42 153 IPR008963 GO:0003993|GO:0046872
Cme03g01915 477 CDD FN3 58 151 IPR003961 GO:0005515
Cme03g01915 477 Pfam Iron/zinc purple acid phosphatase-like protein C 386 443 IPR025733 -
Cme03g01915 477 CDD MPP_PAPs 157 455 IPR041792 -
Cme03g01915 477 Gene3D - 156 464 IPR029052 -
Cme03g01915 477 Gene3D - 59 155 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01915 K22390 ACP7; acid phosphatase type 7 - csv:101210805 943.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01915 Cme-Chr3:27264118 Cme04g00811 Cme-Chr4:10090933 3.77E-84 dispersed
Cme02g01148 Cme-Chr2:16452625 Cme03g01915 Cme-Chr3:27264118 0 transposed
Cme02g02064 Cme-Chr2:26611669 Cme03g01915 Cme-Chr3:27264118 5.64E-19 transposed
Cme03g01451 Cme-Chr3:23823350 Cme03g01915 Cme-Chr3:27264118 1.02E-14 transposed
Cme05g00719 Cme-Chr5:8406345 Cme03g01915 Cme-Chr3:27264118 2.49E-73 transposed
Cme09g01167 Cme-Chr9:16386837 Cme03g01915 Cme-Chr3:27264118 3.77E-29 transposed
Cme01g01364 Cme-Chr1:17012690 Cme03g01915 Cme-Chr3:27264118 0 wgd
Cme03g01915 Cme-Chr3:27264118 Cme08g00896 Cme-Chr8:5883744 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1025 . . . . . . . . . Cmo12g00387 . . . Car12g00413 . . Cpe07g00391 . . . . . . . . . . . . . . . . Cone17ag1369 . . . . Cme03g01915 . . . . . . . . . . . Cma12g00436 . . . . . . . . . . . . . . . . . . . . Csa02g02096 Chy03g01418 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97