Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01916 ATGTTGAAATCTTGTTCATCCAACAACAAGAACAACAAAAAGGCATCCTCAAGAAAGGGTTGTATGAGAGGAAAAGGAGGTCCTGAAAATGCTTCATGTACTTATAAAGGTGTTCGTCAAAGAACTTGGGGCAAATGGGTTGCTGAAATTCGAGAACCAAATCGTGGTGCTCGTCTTTGGCTTGGTACTTTTGATACTTCCTATGATGCTGCTTTAGCTTACGACAATGCTGCTCGTCGTCTTTATGGCTCTGATGCTAAACTCAATCTCCCTCTAATTTCTTCTTCTACTTCTGTTTCTGTGTCTTCTTCTTCTTCTACTACTTCTGATAATAACAACAACAATAGTGTTGTTGCTACTGCTAGTACTTATAATAATAAAGTCAATCCTATGGTGGAAGATGTTGCATCTTCTTCTTCCTCTATTTCTAATAACAAGAGATTTAGGGAGGATGAAGAGGAACAAATTGGAGGGCTTTGGAGAGCTATGAGTATTAGTTTAGATGATTCCATTTGGGTTGAAGCAGCCATGTCTTTGGATTTTCCACTTCTTATGGAACAACAAACCTCTTTTTCTCCTAATTTGGTTGATACTAATCCAAATCCTGGATGGGATTCTTCAATCCCATGGTATTAA 636 38.21 MLKSCSSNNKNNKKASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSYDAALAYDNAARRLYGSDAKLNLPLISSSTSVSVSSSSSTTSDNNNNNSVVATASTYNNKVNPMVEDVASSSSSISNNKRFREDEEEQIGGLWRAMSISLDDSIWVEAAMSLDFPLLMEQQTSFSPNLVDTNPNPGWDSSIPWY 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27268146 27268969 - MELO3C010977.2.1 Cme03g01916 323927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01916 211 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Cme03g01916 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 190 - -
Cme03g01916 211 MobiDBLite consensus disorder prediction 1 15 - -
Cme03g01916 211 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
Cme03g01916 211 SUPERFAMILY DNA-binding domain 34 91 IPR016177 GO:0003677
Cme03g01916 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 9 190 - -
Cme03g01916 211 MobiDBLite consensus disorder prediction 1 33 - -
Cme03g01916 211 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Cme03g01916 211 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Cme03g01916 211 CDD AP2 33 91 IPR001471 GO:0003700|GO:0006355
Cme03g01916 211 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Cme03g01916 211 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01916 Cme04g00507 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01916 Cme-Chr3:27268146 Cme08g02169 Cme-Chr8:27722698 1.17E-31 dispersed
Cme04g02197 Cme-Chr4:29206870 Cme03g01916 Cme-Chr3:27268146 1.29E-32 transposed
Cme03g01916 Cme-Chr3:27268146 Cme04g00507 Cme-Chr4:4159145 5.57E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41078 PF00847 AP2 4.60E-14 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01916 - - csv:101213875 340.887