Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01917 ATGGGCAACTTCGCTTTTCATTTTCTGACTCTCTTTCTCCTCTTTTTCCGACCTCTTTTTGCTACTTCGAATGTTTCGGAGCTTTTCGAAATCTGGTGTACAGAGCATGGGAAATCGTATTCATCCGCCGAAGAAAAGCTATACAGGCTCAGTGTGTTTGCCGATAACTATGAATTTGTTACCCATCACAACAATTTGGGCAATTCTTCTTATACTCTTTCTCTAAATTCTTATGCTGATCTTACCCACCATGAGTTTAAGGTCTCTCGCTTGGGTTTTTCCCCTGCTTTGCGGAACTTCCGGCCGGTTCTGCCGCAAGAACCCTCTCTTCCACGGGACGTTCCCGATTCGTTAGATTGGAGGAAGAAAGGGGCGGTGACCGCTGTTAAGGATCAAGGAAGCTGTGGTGCTTGTTGGTCCTTCTCAGCTACAGGAGCCATTGAAGGGATCAACCAGATTATGACAGGGTCTCTTATTAGTGTCTCTGAACAGGAATTAATTGATTGTGACAGATCTTACAATTCTGGCTGCGGAGGAGGATTGATGGATTATGCATACCAATTTGTGATCAGTAACCATGGGATTGACACCGAGGATGATTATCCTTATCAAGGTCGTGATGGATCGTGCCGTAAGGACAAGCTGCAGAGGAATGTTGTTACCATTGATGGCTATACTGATATTCCTCCAAATGATGAGGGAAAATTACTGCAAGCAGTAGCAGCTCAACCTGTTAGTGTTGGGATATGTGGCAGTGAGAGAGCCTTTCAATTATACTCGAAGGGAATTTTCTCCGGTCCGTGTTCAACTTCTTTGGATCATGCTGTGTTGATTGTAGGATATGGCTCAGAAAATGGAGTTGATTATTGGATTGTGAAGAACTCATGGGGTAAAAGTTGGGGAATGGATGGTTACATGCACATGCAGCGCAACAGCGGCAATTCGGAAGGCGTTTGTGGAATTAACAAGCTTGCTTCATATCCAACTAAAACAAGTCCTAACCCTCCTCCCTCCCCTCCTCCAGGTCCAACAAAATGTAGTATTCTTACTAGCTGTGCTGCTGGGGAAACCTGTTGTTGTGCAAAGAAATTCCTTGGCCTTTGTTTATCATGGAAATGCTGTGGATTGAGCTCTGCCGTATGTTGCAAGGACGGTCGTCATTGTTGCCCCTTTGATTATCCCATTTGTGATACTGACAGGAACCTATGCCTTAAGCGAACGATGAATGGTACACGAATGGAAGTACTTGAGAATAGGAGTTCTTCCGGATCATCTGGTACTTGGAGCTCTTTCTAA 1296 44.68 MGNFAFHFLTLFLLFFRPLFATSNVSELFEIWCTEHGKSYSSAEEKLYRLSVFADNYEFVTHHNNLGNSSYTLSLNSYADLTHHEFKVSRLGFSPALRNFRPVLPQEPSLPRDVPDSLDWRKKGAVTAVKDQGSCGACWSFSATGAIEGINQIMTGSLISVSEQELIDCDRSYNSGCGGGLMDYAYQFVISNHGIDTEDDYPYQGRDGSCRKDKLQRNVVTIDGYTDIPPNDEGKLLQAVAAQPVSVGICGSERAFQLYSKGIFSGPCSTSLDHAVLIVGYGSENGVDYWIVKNSWGKSWGMDGYMHMQRNSGNSEGVCGINKLASYPTKTSPNPPPSPPPGPTKCSILTSCAAGETCCCAKKFLGLCLSWKCCGLSSAVCCKDGRHCCPFDYPICDTDRNLCLKRTMNGTRMEVLENRSSSGSSGTWSSF 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27274447 27278231 + MELO3C010976.2.1 Cme03g01917 323928

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01917 431 PRINTS Papain cysteine protease (C1) family signature 132 147 IPR000668 GO:0006508|GO:0008234
Cme03g01917 431 PRINTS Papain cysteine protease (C1) family signature 274 284 IPR000668 GO:0006508|GO:0008234
Cme03g01917 431 PRINTS Papain cysteine protease (C1) family signature 289 295 IPR000668 GO:0006508|GO:0008234
Cme03g01917 431 CDD Peptidase_C1A 115 328 IPR039417 -
Cme03g01917 431 PANTHER OS05G0508300 PROTEIN 17 363 - -
Cme03g01917 431 SUPERFAMILY Cysteine proteinases 24 329 IPR038765 -
Cme03g01917 431 SMART Inhibitor_I29_2 29 86 IPR013201 -
Cme03g01917 431 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 17 363 - -
Cme03g01917 431 SMART pept_c1 114 329 IPR000668 GO:0006508|GO:0008234
Cme03g01917 431 SMART GRAN_2 346 403 IPR000118 -
Cme03g01917 431 Pfam Granulin 357 404 IPR000118 -
Cme03g01917 431 SUPERFAMILY Granulin repeat 343 376 - -
Cme03g01917 431 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 272 282 IPR025660 -
Cme03g01917 431 Pfam Cathepsin propeptide inhibitor domain (I29) 29 86 IPR013201 -
Cme03g01917 431 Pfam Papain family cysteine protease 114 328 IPR000668 GO:0006508|GO:0008234
Cme03g01917 431 Gene3D Granulin 344 414 IPR037277 -
Cme03g01917 431 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 289 308 IPR025661 -
Cme03g01917 431 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 132 143 IPR000169 -
Cme03g01917 431 Gene3D Cysteine proteinases 18 331 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01917 - - - csv:101211052 819.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00073 Cme-Chr1:516480 Cme03g01917 Cme-Chr3:27274447 2.04E-137 dispersed
Cme03g01917 Cme-Chr3:27274447 Cme07g00326 Cme-Chr7:2071505 3.65E-131 dispersed
Cme03g01910 Cme-Chr3:27222643 Cme03g01917 Cme-Chr3:27274447 2.42E-58 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1019 . . . . . . . . . Cmo12g00389 . . . Car12g00414 Sed05g2303 . Cpe07g00393 Bhi04g00211 Tan02g0772 Cmetu01g1870 . Hepe02g0484 . . Cla08g01454 Cam08g1939 Cec08g1513 Cco08g1652 Clacu08g1629 . Cre08g1415 . . . . . . . Cme03g01917 . Blo18g00796 . . . . . . . . . Cma12g00438 . . . . . . . . . . . . . . . . . . . Lsi08g01359 Csa02g02095 Chy03g01420 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011861 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30