Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01918 ATGGCCGAAGAAGGGCAAGTGATTGGGATTCACAGCGTTGAGGAATTCGACGCGCTCGTACTTAAAGGAAAGGAAACGGGTAAACTGATTGTGGTGGATTTCACTGCTTCCTGGTGTCCACCATGCCGTTTCATTGCTCCAGTATTCGCAGAGTTGGCTAAGACGTACCCCCATGTCATTTTCCTGAAAGTGGACGTTGATGAAGTTCAACCAATTGCTGCGAGGTTCAAAGTTGAAGCAATGCCGACCTTTGCTTTCGTGAAAGATGGTGAGGAAGTTAGCGTTCGCAGGATCGTCGGTGCTGACAAAGTGGGGCTGGGGAGGAACGTATCTGAGTTGTGCGGTCCAGTTCCATCAACTTCTGTTGCATAA 372 49.19 MAEEGQVIGIHSVEEFDALVLKGKETGKLIVVDFTASWCPPCRFIAPVFAELAKTYPHVIFLKVDVDEVQPIAARFKVEAMPTFAFVKDGEEVSVRRIVGADKVGLGRNVSELCGPVPSTSVA 123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27281405 27283145 + MELO3C010975.2.1 Cme03g01918 323929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01918 123 PRINTS Thioredoxin family signature 30 38 - -
Cme03g01918 123 PRINTS Thioredoxin family signature 38 47 - -
Cme03g01918 123 PRINTS Thioredoxin family signature 77 88 - -
Cme03g01918 123 PANTHER THIOREDOXIN 1 118 - -
Cme03g01918 123 SUPERFAMILY Thioredoxin-like 4 103 IPR036249 -
Cme03g01918 123 PANTHER THIOREDOXIN 1 118 - -
Cme03g01918 123 ProSiteProfiles Thioredoxin domain profile. 1 115 IPR013766 -
Cme03g01918 123 CDD TRX_family 14 103 - -
Cme03g01918 123 ProSitePatterns Thioredoxin family active site. 31 49 IPR017937 -
Cme03g01918 123 Gene3D Glutaredoxin 1 116 - -
Cme03g01918 123 Pfam Thioredoxin 11 103 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01918 K03671 trxA; thioredoxin 1 - csv:101211302 189.889
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01918 Cme-Chr3:27281405 Cme10g00993 Cme-Chr10:7863735 8.69E-33 dispersed
Cme03g01918 Cme-Chr3:27281405 Cme03g01919 Cme-Chr3:27287107 2.45E-46 tandem
Cme03g02044 Cme-Chr3:27957908 Cme03g01918 Cme-Chr3:27281405 3.52E-06 transposed
Cme06g00100 Cme-Chr6:631752 Cme03g01918 Cme-Chr3:27281405 1.49E-13 transposed
Cme10g00089 Cme-Chr10:645063 Cme03g01918 Cme-Chr3:27281405 3.63E-06 transposed
Cme03g01918 Cme-Chr3:27281405 Cme04g00516 Cme-Chr4:4248737 9.09E-36 wgd
Cme03g01918 Cme-Chr3:27281405 Cme08g00895 Cme-Chr8:5876569 1.62E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1017 . . . . . . . . Cmo05g00278 . Cma01g01935 Cma09g00130 Car01g01512 . . Cpe06g00089 . Bhi04g00210 . . . Hepe10g0603 . . Cla08g01455 Cam08g1940 Cec08g1514 Cco08g1653 Clacu08g1630 . Cre08g1416 Cone4ag1941 . . Cone20ag0114 Lsi04g01706 Csa03g04245 . Cme03g01918 . . . Bda01g01515 Bpe02g01711 . Bma01g00744 . . Cmo01g01998 Cmo09g00127 . Cma05g00273 Car05g00226 Car09g00116 Cpe11g00226 Cpe02g00101 . . . . . . . Cla05g01907 Cam05g2044 Cec05g2053 Cco05g2107 Clacu05g2036 Cmu05g1915 Cre05g2037 Lsi08g01361 Csa02g02094 Chy03g01421 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002761 0 2 0 0 0 2 4 2 2 2 2 2 3 2 2 3 2 0 3 2 3 1 3 2 2 3 2 2 3 0 56