Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01922 ATGATCACCACTAAGCTTCTCTTGGCCTTTTCCTTCTGCCGTTTGATAGCCACCGTCGGACTCAACATGGGTCTCGCGACGGAGCTTCCCCGTCTTGGTATCGATGGCCTTCTCACCGTCGACCCTTTCGATATTGAAACTGCTTCTATCGATTTCGGTCTCATGACCCGCGACCCGCCTCTAGCCGTTTTGCACCCTGCCTCTGCCGATGACGTCGCTAAATTGATCCGGACGGCGGCGGTTGCGGCGGCGGAGGAGGAGTATGGTGGGTTTACGGTGTCGGCGAGAGGGCATGGGCATTCGATAAACGGGCAGGCGCAGACGGGGAATGGGGTGGTGATTGAAATGAGTGGCGGCGGAAGACAGCACCGGCGCGTCGGTGGGAGGGGTGTTTCGCCGCCGGTACCAGTGGTGTCGGAGAAAGGGAGATTTGTTGATGTGTGGGGCGGAGAGCTTTGGATTGATGTACTGAAATGGACTTTGGAATATGGGTTGGCGCCGAGATCGTGGACGGATTATTTGTATTTGTCGGTCGGCGGGACGCTGTCGAACGGCGGAATCAGCGGCCAAGCTTTTAACCATGGCCCTCAGATTAGCAATGTCCATGAACTTGACGTCGTCACAGGTAATGGAGAGATAGTGAAATGTTCAAATGAAGACAACGCAGAGTTATTCCATGGAGTTCTTGGGGGATTAGGACAATTTGGAATCATCACACGAGCAAGAATTATTCTGGAACCAGCCCCTCAAAGGGTTCGATGGATTAGAGTACTGTACTCAAATTTCGAAGCATTTACAAAGGATCAAGAATGGCTAATCTCATTGCATTCGAAAACAAATAGCAAAGAAAAATTCGATTACGTGGAAGGATTTGTGATCGTTGATGAAGGTTTAATCAACAACTGGAGATCTTCCTTTTTCTCACCGGCGAATCCTGTCAAAATTTCTTCCTTTAGTAAAAACAAATCTGATGGAGCTGTTTTGTACTGCTTGGAGATCACCAAAAATTACCATGAATCCTCATCGCACACCCTTGATCAGGTAATT 1047 49.47 MITTKLLLAFSFCRLIATVGLNMGLATELPRLGIDGLLTVDPFDIETASIDFGLMTRDPPLAVLHPASADDVAKLIRTAAVAAAEEEYGGFTVSARGHGHSINGQAQTGNGVVIEMSGGGRQHRRVGGRGVSPPVPVVSEKGRFVDVWGGELWIDVLKWTLEYGLAPRSWTDYLYLSVGGTLSNGGISGQAFNHGPQISNVHELDVVTGNGEIVKCSNEDNAELFHGVLGGLGQFGIITRARIILEPAPQRVRWIRVLYSNFEAFTKDQEWLISLHSKTNSKEKFDYVEGFVIVDEGLINNWRSSFFSPANPVKISSFSKNKSDGAVLYCLEITKNYHESSSHTLDQVI 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27307800 27309388 + MELO3C030117.2.1 Cme03g01922 323933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01922 349 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 249 348 IPR015345 GO:0009690|GO:0019139|GO:0050660
Cme03g01922 349 Pfam FAD binding domain 60 217 IPR006094 GO:0050660
Cme03g01922 349 Gene3D - 41 115 IPR016167 -
Cme03g01922 349 PANTHER GULONOLACTONE OXIDASE 4 342 - -
Cme03g01922 349 Gene3D - 116 250 IPR016169 -
Cme03g01922 349 ProSiteProfiles PCMH-type FAD-binding domain profile. 56 248 IPR016166 GO:0071949
Cme03g01922 349 PANTHER CYTOKININ OXIDASE 5-RELATED 4 342 - -
Cme03g01922 349 Gene3D - 251 341 IPR016170 -
Cme03g01922 349 SUPERFAMILY FAD-binding/transporter-associated domain-like 35 247 IPR036318 GO:0050660
Cme03g01922 349 SUPERFAMILY FAD-linked oxidases, C-terminal domain 249 345 IPR016164 GO:0003824|GO:0050660
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01922 K00279 CKX; cytokinin dehydrogenase [EC:1.5.99.12] - csv:101212272 644.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01922 Cme-Chr3:27307800 Cme10g00803 Cme-Chr10:5274464 5.91E-107 dispersed
Cme03g01922 Cme-Chr3:27307800 Cme05g02045 Cme-Chr5:28797762 2.78E-99 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1010 . . . . . . . . Cmo05g00273 Cmo12g00392 . . . Car12g00418 . . Cpe07g00396 Bhi04g00207 . . . Hepe10g0607 . . Cla08g01458 Cam08g1944 Cec08g1518 Cco08g1657 Clacu08g1634 . Cre08g1420 . . Cone17ag1365 Cone20ag0116 . . . Cme03g01922 . . . . . . . . . . . Cma12g00441 Cma05g00269 Car05g00223 . Cpe11g00222 . . . . . . . . . . . . . . . Lsi08g01364 Csa02g02088 Chy03g01426 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009284 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34