Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01929 ATGGCGACCCCTGTTGAGCCTCCAAATGGGGTTAGATCTCAAGGAAAACATTACTATTCAATGTGGCAGACATTGTTTGAGATTGATACTAAATATATACCTATCAAGCCTATTGGTCGAGGGGCATACGGTATTGTGTGTTCTTCTGTGAATAGGGAAACAAATGAGAAAGTTGCGATAAAGAGAATACATAATGCTTTTGAGAATCGTATCGATGCTCTCCGGACTTTGCGCGAGCTGAAGCTCCTTAGGCATCTTCGCCACGAAAATGTCATATGTTTGAAAGATGTGATGATGCCTATCCATAGGAGAAGTTTCAAAGATGTCTATTTGGTTTATGAACTGATGGATACTGATCTGCATCAGATTATTAAGTCTTCTCAAACTCTTACGAATGACCACTGCCAATATTTCCTCTTTCAGTTGCTCCGAGGCTTGAAGTATCTGCATTCTGCAAATATTCTACATCGGGACTTGAAGCCGGGGAACCTCCTTGTCAATGCAAATTGTGATCTTAAGATATGTGATTTTGGTTTGGCACGTACGAGCAATGGGAAGAATCAATTTATGACAGAGTATGTCGTAACTCGCTGGTATCGAGCCCCAGAACTGCTGCTCTGCTGCGAGAATTATGGGACGTCAATTGATGTGTGGTCTGTAGGATGCATCTTTGCCGAGCTTCTCGGTAGGAAACCTATCTTCCCTGGTACAGAATGTTTGAATCAACTCAAATTGATAATTAACCTACTGGGTAGCCAGAGAGAGGAAGATCTTGAGTTCATAGACAATCCAAAGGCAAGAAGGTATATAAAATCCCTTCCATACTCTCCTGGAGCTCCTCTTTCCCGTCTTTATCCGAACGCTCATCCTCTTGCAATCGATCTGTTACAAAAGATGCTCGTCTTTGACCCATCAAAGAGGATTAGTGTAACCGAGGCATTACAGCATCCTTATATGTCCCCACTGTATGATCCAAACAGCAATCCTCCAGCTCAGGTGCCAATTGATCTTGAGATAGATGAGGAACTTGGAGAAGAAATGATACGAGAGATGATGTGGAAAGAAATGCTTCATTACCATCCCGAAGACCTGGAAGAACACTCAGAAATGACACGTTTCCATCCCGAACCTACTACAAGTAGCACTGCAGTGTATTCTTAA 1161 42.46 MATPVEPPNGVRSQGKHYYSMWQTLFEIDTKYIPIKPIGRGAYGIVCSSVNRETNEKVAIKRIHNAFENRIDALRTLRELKLLRHLRHENVICLKDVMMPIHRRSFKDVYLVYELMDTDLHQIIKSSQTLTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSNGKNQFMTEYVVTRWYRAPELLLCCENYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINLLGSQREEDLEFIDNPKARRYIKSLPYSPGAPLSRLYPNAHPLAIDLLQKMLVFDPSKRISVTEALQHPYMSPLYDPNSNPPAQVPIDLEIDEELGEEMIREMMWKEMLHYHPEDLEEHSEMTRFHPEPTTSSTAVYS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27348204 27352076 - MELO3C010966.2.1 Cme03g01929 323940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01929 386 Gene3D Phosphorylase Kinase; domain 1 19 355 - -
Cme03g01929 386 CDD STKc_TEY_MAPK 26 361 - -
Cme03g01929 386 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01929 386 Pfam Protein kinase domain 35 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01929 386 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 366 - -
Cme03g01929 386 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 366 - -
Cme03g01929 386 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cme03g01929 386 MobiDBLite consensus disorder prediction 367 386 - -
Cme03g01929 386 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Cme03g01929 386 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
Cme03g01929 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Cme03g01929 386 SUPERFAMILY Protein kinase-like (PK-like) 24 326 IPR011009 -
Cme03g01929 386 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01929 Cme-Chr3:27348204 Cme07g01677 Cme-Chr7:22367188 0 dispersed
Cme03g01929 Cme-Chr3:27348204 Cme11g02185 Cme-Chr11:29178118 1.19E-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64765 PF00069 Pkinase 3.10E-71 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01929 K20535 - csv:101213478 766.148