Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01931 ATGGCAAGACAGCTGCCCCAAAATCATCTTGCGAATCACATTCCAGGAACTACATCTAGCCTTTGTGTGCAGGAGGAGCATCTGATCTCTGCACGAAAATGGTATTTCTGCAAACAGGAAATTGAAAATCATTCGCCCTCCAGGAAGGATGGAATTGATTTCAAAAAAGAGTCTCAACTGCGGAAGTCATATTGCTCATTTCTGCAAGAGCTTGGAATGAAACTGAAAGTGCCTCAAGTAACAATTGCAAGTGCCATGATGCTATGCCACCGGTTCTATATGCGTCAATCCCATGCTAAAAATGACTGGCAGACAATTGGAACTGCAGGTATCTTTCTTGCCTGTAAGATTGAAGAAACACCCCGGTTTCTGAATGATGTTGTTGTTGTGGCTTACGAGTTGATATTCAAATGGGATCCTTCTGCCTCTAAAAGAATCAGACAAAAAGAAGTTTTCAACAAACAAAAGGAATTAATCTTGATTGCAGAGAGGCTTCTATTGTCAACACTTGCATTTGAAGTTGATATTCAACTTCCCTACAAGCCACTTGTTGCTGCTCTAAAAAGATTGGGAATGGCAGCTGACCTTGGGAAGGTGGCCTGGAATTTTGTAAATGATTGGCTTTGTACAACGCTGTGCTTGGAGTACAAACCCCATTACATTGCAGCAGGCTCAATATTTCTTGCTTCCAAATTTCAAAAGGTGAAATTGCCTTCGGATAAGGGAAAGGTTTGGTGGATGGAGTTTGATGTTTCGCCAAAACAGTTACAAGAGGTTATACAGCAAATGTTGAAGCTATTTGAGAAAGATAGAAAACAAAGCCTACCACCTTCAAAAGAGAAACCTCACCAGCCAGAAGTTTTAGATGGACAGACAAGGGTTGATAGTTCCCAATCATGTATATCCAGCGTGACAGTTTCTGATCAGAGTCATGAAGCCATGACAGAGTCCAGTGAGTGCAATAAGTCTGTAATGCCTAATTGTTGCCACAATCAGCAAAATATAAATCACAGTATCAGTCCTGTGGAAGTTTTACCCTGCCAAACAAGCGACACGGGAAGTTCAAGTAGTGTCATTGACAATGGTGATACTGGGATTTGTCAGAATACTGAGGAAAATTATTCTGATCACATCACACTGTCAACAACTGTTTCTATTCCAGTTTCTAAGGACTGCAAAAAGATAAACTTATTTCAAATCAGAGAGGCAATAAAGAGAAGACGACTTTCTAGAGCTACAAGTACGAAGGAAGTACAGCCCATGAGTCCAGACATTGACGGCGAAGCATGGATAGAAAAAGAGCTGGAACAGGGAATAGAGCTAGAATACGAATCCTCATTAAATAAGAAAAGAAAGGCATCTTGA 1365 40.81 MARQLPQNHLANHIPGTTSSLCVQEEHLISARKWYFCKQEIENHSPSRKDGIDFKKESQLRKSYCSFLQELGMKLKVPQVTIASAMMLCHRFYMRQSHAKNDWQTIGTAGIFLACKIEETPRFLNDVVVVAYELIFKWDPSASKRIRQKEVFNKQKELILIAERLLLSTLAFEVDIQLPYKPLVAALKRLGMAADLGKVAWNFVNDWLCTTLCLEYKPHYIAAGSIFLASKFQKVKLPSDKGKVWWMEFDVSPKQLQEVIQQMLKLFEKDRKQSLPPSKEKPHQPEVLDGQTRVDSSQSCISSVTVSDQSHEAMTESSECNKSVMPNCCHNQQNINHSISPVEVLPCQTSDTGSSSSVIDNGDTGICQNTEENYSDHITLSTTVSIPVSKDCKKINLFQIREAIKRRRLSRATSTKEVQPMSPDIDGEAWIEKELEQGIELEYESSLNKKRKAS 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27367677 27375411 + MELO3C010964.2.1 Cme03g01931 323942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01931 454 MobiDBLite consensus disorder prediction 271 292 - -
Cme03g01931 454 SUPERFAMILY Cyclin-like 178 279 IPR036915 -
Cme03g01931 454 CDD CYCLIN 178 232 IPR013763 -
Cme03g01931 454 CDD CYCLIN 60 131 IPR013763 -
Cme03g01931 454 MobiDBLite consensus disorder prediction 271 288 - -
Cme03g01931 454 PANTHER CYCLIN-T1-3 24 329 - -
Cme03g01931 454 PANTHER CYCLIN-T1-3 316 444 - -
Cme03g01931 454 SUPERFAMILY Cyclin-like 32 175 IPR036915 -
Cme03g01931 454 Pfam Cyclin, N-terminal domain 34 174 IPR006671 -
Cme03g01931 454 PANTHER CYCLIN 24 329 IPR043198 GO:0006357|GO:0016538
Cme03g01931 454 PANTHER CYCLIN 316 444 IPR043198 GO:0006357|GO:0016538
Cme03g01931 454 Gene3D - 176 281 - -
Cme03g01931 454 SMART cyclin_7 66 168 IPR013763 -
Cme03g01931 454 SMART cyclin_7 181 265 IPR013763 -
Cme03g01931 454 Gene3D - 24 174 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01931 K15188 CCNT; cyclin T - csv:101214841 882.093
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01931 Cme-Chr3:27367677 Cme11g01601 Cme-Chr11:23800296 4.84E-119 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g991 . . . . . . . . Cmo05g00266 Cmo12g00397 . . . Car12g00422 . . Cpe07g00401 Bhi04g00195 . . . Hepe10g0615 . . Cla08g01465 Cam08g1953 Cec08g1528 Cco08g1666 Clacu08g1643 . Cre08g1428 . . Cone17ag1357 . . . . Cme03g01931 . . . . . . . . . . . Cma12g00447 Cma05g00261 Car05g00219 . Cpe11g00216 . . . . . . . . . . . . . . . Lsi08g01374 Csa02g02077 Chy03g01436 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008671 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 4 1 35