Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01934 ATGTCCTCCCTCTGCTTCTGGTGCTCTGCGGCCGCGGCCACGGCCACCGCTGTTGCTCTCTGGATCGTTGTCGTTTTCCATTTTTTGTTGAAGAATAAGTCGCCGTCTTCGCGGATTTCTCCTGCTGGTACTCCTCCTGGAAGCAGAGGATTGCCTTTCATTGGAGAGACGCTGCAGTTCATGGCTGCCGTTAACTGTAGCAGCGGCGTTTATGATTTCGTCAGAATCCGCTGCCTCCGGTATGGAGGATGTTTTAAGACTCGAATATTTGGGGAAACACATGTGTTTGTATCAAGCACAGAATGGGCGAAGCTTATACTGAACGATGGAGGAGGAAGGTTCACTAAAAAGTACATAAAGTCCATTGCTGAGTTAGTCGGCCATCAAAGTTTGCTCTGTGCTCCACATTTACACCACAAATTCTTACGAAGTCGTCTCATCAATCTCTTCTCTTCTTGCTTTTTGGCCTCTTTCGTTCCTCAATTCGATCGACAAATTGTCGAGACGTTTCAAAGATGGGAGAGTGGTTCCACCATTTTCGTCCTCACCGAAGCCCTCAAGATAACATGCAAAGCGATGTGTAAGATGTTAATAAGCTTAGAGGAGGAAAACGAAGTAGAGACGATACAAAAAGATGTTGCATATATTTGTGCAGCTATGCTCGCATTCCCATGGCGATTTCCATGGACAAGATTCGACACAGGTCTTAAGGCAAGACGAAGAATCATAAAGAAACTCAAAAGCATAATTCAGGAGAGACGAGAATTAGAGCTCCAATATGAAGATTTCCTACAACAATTGCTGATGGAAGAGGACAATGAAAGACCACTATCAGATATGGAGATTGGAGATAATATATTGACGATGTTGATTGCTGGACAAGATACAACAGCGAGTGCTATCACTTGGATAGTGAAATTCTTAGATGAGAACCAAGACGTGCTTCAAAATCTAAAGGAAGAACAATTTAAAATATTGGAGAAACAACGAGAAGAGAATCGAAATTTCCTTACATCGGAAGATCTTGCCAACATGTCCTATGCTGCCAAGATAGTAAAAGAATCCTTGAGGTTAGCATCTATTGTTCCATGGTTGCCGAGGCTAATCCTTCACGACACTGAAATTCAAGATTACAAAATCAAGAAAGGTTGGAATGTTAACATTGATGTGAGATCACTGCACTCAGATCCTTCTATTTACAAAGATCCAATTAAGTTTGATCCATCCAGGTTTGATGAAGAAACAAAGGCATTTGGCTTTCTAGCCTTTGGGATGGGAGGGAGGCAGTGCCTAGGTATGAACCTAGCCAAAGCCATGATGCTCGTCTTTCTTCACCGCTTGGTTACTTCTTTCAGATGGAAAGTAATGGACTGCGACTCCAGCATTGAAAAGTGGGCGCTTTTCACCAAATTAAAGAGCGGTTGTCCAATTCTCATCACGCCTATTCAATCTTAA 1455 42.96 MSSLCFWCSAAAATATAVALWIVVVFHFLLKNKSPSSRISPAGTPPGSRGLPFIGETLQFMAAVNCSSGVYDFVRIRCLRYGGCFKTRIFGETHVFVSSTEWAKLILNDGGGRFTKKYIKSIAELVGHQSLLCAPHLHHKFLRSRLINLFSSCFLASFVPQFDRQIVETFQRWESGSTIFVLTEALKITCKAMCKMLISLEEENEVETIQKDVAYICAAMLAFPWRFPWTRFDTGLKARRRIIKKLKSIIQERRELELQYEDFLQQLLMEEDNERPLSDMEIGDNILTMLIAGQDTTASAITWIVKFLDENQDVLQNLKEEQFKILEKQREENRNFLTSEDLANMSYAAKIVKESLRLASIVPWLPRLILHDTEIQDYKIKKGWNVNIDVRSLHSDPSIYKDPIKFDPSRFDEETKAFGFLAFGMGGRQCLGMNLAKAMMLVFLHRLVTSFRWKVMDCDSSIEKWALFTKLKSGCPILITPIQS 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27387176 27390541 + MELO3C010961.2.1 Cme03g01934 323945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01934 484 Pfam Cytochrome P450 45 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01934 484 PRINTS P450 superfamily signature 292 309 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01934 484 PRINTS P450 superfamily signature 350 361 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01934 484 PRINTS P450 superfamily signature 421 430 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01934 484 PRINTS P450 superfamily signature 430 441 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01934 484 PRINTS E-class P450 group I signature 281 298 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01934 484 PRINTS E-class P450 group I signature 301 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01934 484 PRINTS E-class P450 group I signature 349 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01934 484 PRINTS E-class P450 group I signature 389 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01934 484 PRINTS E-class P450 group I signature 420 430 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01934 484 PRINTS E-class P450 group I signature 430 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01934 484 PANTHER CYTOCHROME P450, FAMILY 722, SUBFAMILY A, POLYPEPTIDE 1 22 480 - -
Cme03g01934 484 Gene3D Cytochrome P450 35 480 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01934 484 PANTHER CYTOCHROME P450 26 22 480 - -
Cme03g01934 484 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 423 432 IPR017972 GO:0005506|GO:0016705
Cme03g01934 484 Coils Coil 239 273 - -
Cme03g01934 484 SUPERFAMILY Cytochrome P450 39 481 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00680 Cme-Chr1:6136516 Cme03g01934 Cme-Chr3:27387176 2.88E-72 dispersed
Cme03g01934 Cme-Chr3:27387176 Cme07g00357 Cme-Chr7:2295995 3.79E-72 dispersed
Cme03g01934 Cme-Chr3:27387176 Cme08g00877 Cme-Chr8:5777745 7.19E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01934 - - csv:101215324 892.493