Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01936 ATTAGAAGAAAAAAAAAAAGGAGTAAAGTCAGAACACTAGAAAGTGAGAAAACCCATCGCGAAATTTTGCCTTGGAGAAGACGAAAACCCCTAAATCCTCCATTAATACGACCTCAATCCTCTCCCTTTTACTCACCGGAGATCCTTTTTCTGCCTCTTCTTTTTCTTTCTTCTTCACCCAATATGTTTAGGAATCAGTACGATACCGATGTCACCACATGGAGTCCCGCCGGTAGGTTGTTTCAGGTTGAGTACGCCATGGAGGCCGTCAAGCAAGGCTCCGCCGCCATTGGCCTCCGATCCAACACCCACGTGGTTCTAGCCTGCGTTAATAAGGCTAACTCTGAACTATCCTCTCACCAGAAGAAGATCTTCAAAGTCGACGATCACATCGGCGTCGCCATTTCTGGCCTTACTGCTGATGGACGCGTTCTTTCTCGTTATATGAGATCTGAGTGTATCAATTACAGCTACACCTATGAATCTCCGCTTCCTGTTGGTCGTCTCGTAGTTCAACTCGCTGATAAGGCTCAGGTCTGCACTCAGCGCTCGTGGAAACGTCCATATGGTGTTGGACTCCTGGTAGGTGGTCTGGACGAATCTGGCGCTCATCTTTACTACAACTGCCCGAGTGGCAATTACTTTGAGTATCAAGCTTTTGCCATAGGGTCCCGTTCACAGGCTGCAAAGACATACTTGGAAAGAAGGTTTGAGAACTTCAAGGACTCTTCTAGAGATGAATTGATCAAAGATGCACTGATCGCTACCAGAGAAACCTTGCAAGGAGAAAAACTTACTTCCTCCATATGCACAATTGCCATTTTAGGAGTTGGGGAACCTTTTCATATATTGGATAGGGAAACTGTGCAGAAGTTGATTGATGAATTTGAGATTGTTAAGGAGGATGACGTTCCTGCTGCGGATCAGGATATCGCCCCAGAGCAGGGTGATTCTGCTGCCCCTGAACCAGCTGCAGGGACAGACCAAGGAAGTGCCCCAGATCAAGGTGTTGCGCCAATGGATATCTAA 1029 46.84 IRRKKKRSKVRTLESEKTHREILPWRRRKPLNPPLIRPQSSPFYSPEILFLPLLFLSSSPNMFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSNTHVVLACVNKANSELSSHQKKIFKVDDHIGVAISGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFKDSSRDELIKDALIATRETLQGEKLTSSICTIAILGVGEPFHILDRETVQKLIDEFEIVKEDDVPAADQDIAPEQGDSAAPEPAAGTDQGSAPDQGVAPMDI 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27415059 27418695 + MELO3C010960.2.1 Cme03g01936 323947

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01936 342 CDD proteasome_alpha_type_1 67 276 IPR035144 GO:0019773
Cme03g01936 342 ProSitePatterns Proteasome alpha-type subunits signature. 67 89 IPR000426 GO:0006511|GO:0019773
Cme03g01936 342 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 63 293 IPR029055 -
Cme03g01936 342 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 62 333 - -
Cme03g01936 342 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 65 296 IPR029055 -
Cme03g01936 342 SMART Proteasome_A_N_2 67 89 IPR000426 GO:0006511|GO:0019773
Cme03g01936 342 Pfam Proteasome subunit 90 274 IPR001353 GO:0005839|GO:0051603
Cme03g01936 342 ProSiteProfiles Proteasome alpha-type subunit profile. 82 293 IPR023332 -
Cme03g01936 342 PANTHER PROTEASOME SUBUNIT ALPHA TYPE 62 333 - -
Cme03g01936 342 MobiDBLite consensus disorder prediction 303 342 - -
Cme03g01936 342 Pfam Proteasome subunit A N-terminal signature 67 89 IPR000426 GO:0006511|GO:0019773
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01936 K02725 PSMA1; 20S proteasome subunit alpha 6 [EC:3.4.25.1] - csv:101215076 561.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01936 Cme-Chr3:27415059 Cme07g00641 Cme-Chr7:5457714 1.53E-45 dispersed
Cme03g01936 Cme-Chr3:27415059 Cme08g00945 Cme-Chr8:6216296 2.34E-36 transposed
Cme03g01936 Cme-Chr3:27415059 Cme06g02372 Cme-Chr6:30964788 7.22E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g968 Blo01g01569 Blo12g00903 Bda01g00523 Bda03g00266 Bpe02g00383 Bpe04g00220 Bma04g00214 Bma01g02327 Cmo05g00263 Cmo12g00405 . . . Car12g00430 . . Cpe07g00407 Bhi04g00191 . . . Hepe10g0622 . . Cla08g01470 Cam08g1958 Cec08g1533 Cco08g1671 Clacu08g1648 . Cre08g1433 Cone4ag1921 Cone7ag1833 . . . . . Cme03g01936 . . . . . . . . . . . Cma12g00455 Cma05g00258 Car05g00215 . Cpe11g00213 . . . . . . . . . . . . . . . Lsi08g01380 Csa02g02071 Chy03g01441 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005435 3 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40