Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01956 ATGCACCATGCGAATTCCCAGGAGACAGGTTTCCTTTTGCCTCTCCTTATTCTCGCTCGAATTCACATACCCTTTATCCTCCCCAAGTTTTCTGGGAATTCCCAATTCCTTTATCCGCAAACCCAAAAGGATTCATACCCTAGATCTCAATTTGAAGCTCGTAGTTTCCCTTTTCTGTTAACTATCATGGCAGGATTAAATCAGTTGCGTCCTATTGATGCCATGGGTGAGAACCTTGGGACTGTCTTGAAGGAGAAGAGAACACATTCTCTTGATGTTACCCACACTGAGGATGGCCAGGAGCCATGCATATGGTCATCACCGGAAGAATGCAAAATTGATATTGGAAAGCAGATCTTTTGCAATAGATCTTTGAATATGAAAAATATTGTTGCCGTGGGCTTTGACATGGATTACACGTTGGCGCAATACAAGCCAGAAACTTTTGAGTCCCTCGCATATGAAGGCACAATAAGAAAGTTGGTTTATGATTTGGGATATTCTGAAGAGATGGATAGGCACAAGTACGTCAAAGTGGCTTACCATGGTTTCAAAGAAATGTCCAAGGATGATAAAGTTGAGACATATGGAAATACTTTAGTACGGGATTCTTTTGATGAGCCTGACTATGCTCTCATTGATACCCTTTTTTCACTAGCTGAAGCCTACTTGTTTGCTCAACTGGTTGACTTCAAGGATAATAATCCAGACAAAGTTCCAGAAGATATTGATTATGCTCGGATGTATAAAGATGTTAGAGCTGCAGTAGATTTGTGTCACCGTGATGGAACCTTAAAGCAAATGGTTGCAAAAGATCCCGAAAGCTTATGGGACTATACAAACGTTGTGATGAACTTCCTTTGTAATTCTTCTGCATCAGATGGTGATCAGAAGCGCAATTTTGATTGGCTTCAGTATTTCGATGTTGTTATCACGGGCAGTGCTAAACCAGGTTTCTTCCATGATGACAATCGTGCCAATCTATTTGAGGTTGAAGCAAAGTCCGGAATGCTACTTAATACTGATAATGGTTCGCCAATGCCTCAGGTGGGAACGGCGTCGATGGCTTTGTCACCGACAAAGTTAAGTAAATCTTGCAGAGTTTTTCAGGGAGGCAATGTCAGGCATCTGCACAAACTTCTTTCCATTGAATCGAGTTCACAGGTTCTTTATGTTGGAGATCACATCTATGGAGATATATTACGGAGCAAAAAGGCTCTAGGATGGAGGACTATGCTTGTAGTTCCGGAGCTTGAAAGGGAGGTCGAGCTCTTATGGGAGTTGAGGAAGACCCGCAAGCAACTTCAACTATTAAGAAACGAGCGGGATGCCATTGAAGACCAAATACATCATTTGAAGTGGTCTCTCAAATTTGAAGATATCGAGGCTGATGAGAAGGACAAATTATCTACTGGACTACATCAGTTAGAGGGTGAACGAGAACGAGTGCGGTTGAGTCATCAAGATGCTCTACGGGAATGTCACCGACAGTTTCATGGGGTTTGGGGACAACTGATGAAGACTGGATATCAAAACTCTAGATTTGCTCATCAAGTAGAGAGATTTGCTTGCCTCTACAGCAGCCAAGTGACCAACTTGAGCCTATATTCCCCAGATAAATACTACAGGCCAAGTGAAGATTTTATGCCCCATGAATTTGGCATCATTCCTTTGTGA 1677 42.28 MHHANSQETGFLLPLLILARIHIPFILPKFSGNSQFLYPQTQKDSYPRSQFEARSFPFLLTIMAGLNQLRPIDAMGENLGTVLKEKRTHSLDVTHTEDGQEPCIWSSPEECKIDIGKQIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYEGTIRKLVYDLGYSEEMDRHKYVKVAYHGFKEMSKDDKVETYGNTLVRDSFDEPDYALIDTLFSLAEAYLFAQLVDFKDNNPDKVPEDIDYARMYKDVRAAVDLCHRDGTLKQMVAKDPESLWDYTNVVMNFLCNSSASDGDQKRNFDWLQYFDVVITGSAKPGFFHDDNRANLFEVEAKSGMLLNTDNGSPMPQVGTASMALSPTKLSKSCRVFQGGNVRHLHKLLSIESSSQVLYVGDHIYGDILRSKKALGWRTMLVVPELEREVELLWELRKTRKQLQLLRNERDAIEDQIHHLKWSLKFEDIEADEKDKLSTGLHQLEGERERVRLSHQDALRECHRQFHGVWGQLMKTGYQNSRFAHQVERFACLYSSQVTNLSLYSPDKYYRPSEDFMPHEFGIIPL 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27506979 27513713 + MELO3C010944.2.1 Cme03g01956 323967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01956 558 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 274 558 IPR008380 -
Cme03g01956 558 PIRSF NT5C2 170 276 IPR016695 -
Cme03g01956 558 PIRSF NT5C2 274 557 IPR016695 -
Cme03g01956 558 PIRSF NT5C2 100 172 IPR016695 -
Cme03g01956 558 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 170 274 IPR008380 -
Cme03g01956 558 Pfam 5' nucleotidase family 119 170 IPR008380 -
Cme03g01956 558 Pfam 5' nucleotidase family 275 553 IPR008380 -
Cme03g01956 558 Pfam 5' nucleotidase family 171 274 IPR008380 -
Cme03g01956 558 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 58 170 IPR008380 -
Cme03g01956 558 Coils Coil 473 493 - -
Cme03g01956 558 SUPERFAMILY HAD-like 117 554 IPR036412 -
Cme03g01956 558 PANTHER BNAA07G31970D PROTEIN 58 170 - -
Cme03g01956 558 Gene3D - 115 162 IPR023214 -
Cme03g01956 558 Gene3D - 260 444 IPR023214 -
Cme03g01956 558 Coils Coil 428 455 - -
Cme03g01956 558 PANTHER BNAA07G31970D PROTEIN 274 558 - -
Cme03g01956 558 PANTHER BNAA07G31970D PROTEIN 170 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01956 - - - csv:101216999 939.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01956 Cme-Chr3:27506979 Cme11g02127 Cme-Chr11:28820278 2.10E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g945 . Blo12g00908 . Bda03g00260 . Bpe04g00213 Bma04g00209 . . . . . . Car12g00446 . . Cpe07g00424 . . . . . . . Cla08g01488 Cam08g1978 Cec08g1552 Cco08g1689 Clacu08g1668 . Cre08g1451 . . Cone17ag1342 Cone20ag0139 . . . Cme03g01956 . Blo18g00815 Bda08g01284 Bda01g01493 Bpe02g01689 Bpe05g00090 . Bma05g00120 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01395 Csa02g02053 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003481 3 3 3 2 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 3 1 48