Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01960 ATGTCCTTTTCTTCACGCTCCGCAAAGCTCACCATTCTAGCTCTTCTCTCCGCCTCTACTTTGTATTGTTTCTACAAGTCCCGCCGTCTCAGAAAGCTTAAACTCTCCTTAAACCCCACTCTTTCTTCTCGCAAACCCAAACTGTTTTTCATTTCTCAAACTGGTACCTCCAAGGCCCTAGCTCATCGTCTGCTCAACGTTTTGAATTCCAATGGGTTGGTTTTCGATCTTGTTGATCCCAAGGATTACGAGCCTGAGGATCTTTTTAAGGAAACTTTAGTTTTGTTTGTTGCTTCCACTTGGGAAGACGGAGGACCGCCTCCTCATGCTAAATTTCTCGCTAATTGGCTATCTGAAAGCGCTGAGGATTTTAGAGTTGGTTCGTTGTTGCTTTCTCAGTGTAAATTTTCTGTGTTTGGGGTTGGTAGTCGAGTTTATGGTGAGACATACAATGCGGTTGCAAGGGATTTTTCTAAGCGGATGAAGTCATTGGGTGCGAAGGAGATTTTACCGATTGGCGAAGGAGACGTTGATGGAGGTGATATTGATAAGTGTTTTGATGATTGGAGTAGGAAATTGCTGAAGGTTGTGAAGGTTGATGCCGAGGGAAATGGGGTGGAATTATGTTCTGGGATTGCTGGGGACAGTGATGCTGTAAGTGTTGAGGAGGAGTATGAAGAAGAAGATGACGACCTTGGGGAGGAGGACATCGTTGATCTTGAGGATATTGCCGGTAAGGGCCCTTCGAGAAAGTCTACGAATGTAGTTGAAACTAATGGGAAGTTGAATGGGAAAAAGGTTATGGTGACCCCGGTGATTAGAGCGAGCTTGGAAAAGCAGGGATATAAAATTATTGGCTCACATAGCGGAGTAAAAATATGTAGATGGACGAAGTCTCAGCTTCGAGGACGAGGAGGTTGCTATAAACATTCATTTTATGGCATAGAAAGTCATCGATGCATGGAGGCAACTCCCAGTTTGGCGTGTGCCAACAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTAGGAAAGAGTTGGCAGTGGGAGATGGATGATCCATTGGATATTGTGAATTCCGCAATAGATTTACACACAAAGATGATCAAGCAAATGAAAGGTGTTCCGGGTGTTACGCAGGAGAAATTGGAGGAAGGCCTGTCTCCAAGACATTGTGCCTTATCCCTTGTTGGTGAACCTATTATGTACCCGGAGATTAATACACTTGTTGATGAATTGCATCAAAGACGGATTTCAACTTTCTTGGTGACAAATGCTCAGTTTCCCGATAAAATAAAATTGCTGAAGCCAGTCACCCAGTTGTATGTAAGTGTAGATGCTGCGACGAAGGAGAGCTTGAAGGCAATTGATAGACCACTTTTTGGGGATTTCTGGGAGCGATTCATTGATTCTTTGAAAGCTCTAAATGAAAAGCAACAGCGAACAGTTTATCGATTGACGTTGGTGAAGGGGTGGAACACAGAAGATATCGATGCCTATTCGAATCTCTTTAGCATTGGTAGACCTGATTTTGTAGAAATCAAGGGCGTCACGTATTGTGGATCATCTAATACATCAAAGTTGACAATGGAGAATGTTCCTTGGCATTCTGATGTTAAGTCTTTTTCGGAGGCTTTAGCTGCGAAAAGTCAAGGGGAGTATGAAGTTGCTTGTGAGCATGTGCACTCGTGTTGCGTTCTTTTAGCTAAAACTGACAAATTTAGGGTCGATGGCCAGTGGTTCACTTGGATAGATTACGAGAAATTCCATGACCTGGTGGCCTCTGGAAAACCTTTTGATAGCAAGGACTACATTGCTCCAACACCATCATGGGCTGTATATGGCTCTGACGAAGGTGGATTCGATCCTGATCAATCTCGATACAGGAAGGAGCGGCATCATAAACCAAAACCCACATCCTGA 1926 43.82 MSFSSRSAKLTILALLSASTLYCFYKSRRLRKLKLSLNPTLSSRKPKLFFISQTGTSKALAHRLLNVLNSNGLVFDLVDPKDYEPEDLFKETLVLFVASTWEDGGPPPHAKFLANWLSESAEDFRVGSLLLSQCKFSVFGVGSRVYGETYNAVARDFSKRMKSLGAKEILPIGEGDVDGGDIDKCFDDWSRKLLKVVKVDAEGNGVELCSGIAGDSDAVSVEEEYEEEDDDLGEEDIVDLEDIAGKGPSRKSTNVVETNGKLNGKKVMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWEMDDPLDIVNSAIDLHTKMIKQMKGVPGVTQEKLEEGLSPRHCALSLVGEPIMYPEINTLVDELHQRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKESLKAIDRPLFGDFWERFIDSLKALNEKQQRTVYRLTLVKGWNTEDIDAYSNLFSIGRPDFVEIKGVTYCGSSNTSKLTMENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKFHDLVASGKPFDSKDYIAPTPSWAVYGSDEGGFDPDQSRYRKERHHKPKPTS 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27531480 27538139 + MELO3C010940.2.1 Cme03g01960 323971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01960 641 Pfam Flavodoxin 48 189 IPR008254 GO:0010181
Cme03g01960 641 CDD Radical_SAM 325 497 - -
Cme03g01960 641 ProSiteProfiles Flavodoxin-like domain profile. 46 194 IPR008254 GO:0010181
Cme03g01960 641 MobiDBLite consensus disorder prediction 606 641 - -
Cme03g01960 641 SFLD Radical SAM 264 576 IPR007197 GO:0003824|GO:0051536
Cme03g01960 641 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 3 636 IPR034556 GO:0008033|GO:0051539
Cme03g01960 641 Pfam Radical SAM superfamily 325 503 IPR007197 GO:0003824|GO:0051536
Cme03g01960 641 SFLD tRNA wybutosine-synthesizing 264 576 IPR034556 GO:0008033|GO:0051539
Cme03g01960 641 SUPERFAMILY Radical SAM enzymes 326 505 - -
Cme03g01960 641 Gene3D Aldolase class I 252 583 IPR013785 -
Cme03g01960 641 PRINTS Flavodoxin signature 47 60 IPR001094 GO:0010181
Cme03g01960 641 PRINTS Flavodoxin signature 95 106 IPR001094 GO:0010181
Cme03g01960 641 PRINTS Flavodoxin signature 133 143 IPR001094 GO:0010181
Cme03g01960 641 PRINTS Flavodoxin signature 158 177 IPR001094 GO:0010181
Cme03g01960 641 Pfam Wyosine base formation 508 571 IPR013917 -
Cme03g01960 641 Gene3D - 25 204 IPR029039 -
Cme03g01960 641 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 3 636 - -
Cme03g01960 641 SUPERFAMILY Flavoproteins 44 198 IPR029039 -
Cme03g01960 641 ProSiteProfiles Radical SAM core domain profile. 313 556 IPR007197 GO:0003824|GO:0051536
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01960 K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44] - csv:101217239 1220.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01572 Cme-Chr2:22768872 Cme03g01960 Cme-Chr3:27531480 9.05E-11 dispersed
Cme03g01960 Cme-Chr3:27531480 Cme05g01367 Cme-Chr5:22682924 4.09E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g939 . . . . . . . . Cmo05g00245 . . . . . Sed11g1032 . . Bhi04g00248 Tan02g1957 Cmetu03g0117 . Hepe10g0647 . Lcy13g1990 Cla08g01493 Cam08g1982 Cec08g1556 Cco08g1693 Clacu08g1672 . Cre08g1455 . . Cone17ag1338 . . . . Cme03g01960 Blo17g00803 . Bda08g01288 . . Bpe05g00087 . Bma05g00116 . . . . Cma05g00237 Car05g00199 . Cpe11g00197 . . . . . . . . . . . . . . . Lsi08g01398 Csa02g02049 Chy03g01465 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009285 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34