Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01965 ATGTTCGGGTTGGCCGGTTCAAAAGCATTGAAAACCGGTGTACTTGGTTCGGCCACTGACTTCGTTCAAACCGGACCGTGCGCAAGGCGATCGCGACGCAAAATGGCGGGAAATATTGGCGCCATTGTCGACAATGGAGCATTTCTTTCTCGTCTTCCGAGATATAAACCCCATTTATCTTCCTCCAATTCTAAATCCAACCGCATCAATTTCAGGTTCAATTCCTATTTCTCTCAAACCCTAAAGATGGCGCAGAACGGCACTTCAGAAGTTCAGGAATCGTTGCGGTCGCCCAAGGTGCAGAAGCTTACTCACGACAATGGCGAATCTGAAAATGTTAGCAAGTCATCGATGCTTCTCAGAGTGAAAAAGCTGTCTGAGAAAGCCGTGTTGCCATCGCGAGCCTCCGCTCTCTCCGCTGGTTACGACCTTTCAAGTGCAGTAGAGACGAAGGTCCCTGCTCGAGGGAAAGTTCTGGTTCCAACTGACTTGAGCATTGCGATTCCGGAAGGAACTTACGCTCGGATCGCGCCGCGCTCTGGTTTGGCTTTGAAGCATGCGATCGATGTTGGTGCTGGTGTTATTGATGCTGATTACAGAGGCCCTGTGGGAGTGATACTGTTCAATCACTCCGATGTGGACTTTGAGGTGAAAGCGGGCGACAGGATCGCTCAGATGATTCTTGAGAAAATTGTGACGCCGGAGGTGATGGAGGTCGAGGATTTGGATTCCACTCTCAGAGGTGAAGGTGGCTTTGGCTCCACAGGTGTTTGA 774 50.39 MFGLAGSKALKTGVLGSATDFVQTGPCARRSRRKMAGNIGAIVDNGAFLSRLPRYKPHLSSSNSKSNRINFRFNSYFSQTLKMAQNGTSEVQESLRSPKVQKLTHDNGESENVSKSSMLLRVKKLSEKAVLPSRASALSAGYDLSSAVETKVPARGKVLVPTDLSIAIPEGTYARIAPRSGLALKHAIDVGAGVIDADYRGPVGVILFNHSDVDFEVKAGDRIAQMILEKIVTPEVMEVEDLDSTLRGEGGFGSTGV 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27556388 27558095 - MELO3C010935.2.1 Cme03g01965 323976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01965 257 PANTHER DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE 90 257 - -
Cme03g01965 257 Gene3D - 107 257 IPR036157 -
Cme03g01965 257 PANTHER DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE 90 257 IPR008181 GO:0000287|GO:0004170|GO:0006226|GO:0046081
Cme03g01965 257 CDD trimeric_dUTPase 140 228 IPR033704 -
Cme03g01965 257 TIGRFAM dut: dUTP diphosphatase 121 256 IPR008181 GO:0000287|GO:0004170|GO:0006226|GO:0046081
Cme03g01965 257 Pfam dUTPase 128 256 IPR029054 -
Cme03g01965 257 MobiDBLite consensus disorder prediction 87 114 - -
Cme03g01965 257 SUPERFAMILY dUTPase-like 116 257 IPR036157 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01965 K01520 dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23] - csv:101218654 400.208
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g931 . . . . . . . . Cmo05g00242 . . . . . . . . Bhi04g00255 . . . Hepe10g0651 . . Cla08g01497 Cam08g1987 Cec08g1562 Cco08g1699 Clacu08g1677 . Cre08g1460 . Cone7ag1819 . . . . . Cme03g01965 . . . . . . . . . . . . Cma05g00234 . . . . . . . . . . . . . . . . . . . Csa02g02044 Chy03g01469 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006777 1 1 3 3 1 1 0 1 1 1 1 1 1 1 0 1 1 1 0 1 1 2 1 1 0 1 1 1 0 2 31