Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01966 ATGGCCGGCCGCTTCGACTTTGGTTCTCGTCCCAATCTCTCTGTTTCCAGTCCTCTCCATGCTGCCAATGATGTTCAGGGATCTGAAAATCCAATTCCTCTTTCACCACAGTGGCTTCTGCCTAAGCCAGGGGAGAGTAAGCATGGAATTGGAACTGGGGAAAACCATTTCAGTCATCAACCTGCTTATGGGAATCGCATGGACATGATGAAGGGATCTGAGAATTATGAGGATATGAATGACACTCAAAAGAAAAAAGAAGTGTTTAGGCCATCCGTGACTGATTCTGAAATTGGTAGGCGTGACCGTTGGCATGATGAAGAAAGAGAAAATAATTCTTCAATGCGTAAAGATCGTTGGAGGGATGGCGAGAAAGAAATGGGTGACGGTCGCAAGATGGATCGTTGGAATGAAGACTCATCCACAAGAGTCTTTAGGGAATCTCGTCGAGGCCCATCGGAACGCTGGTCTGATTCAAATAATCGGGATAATGTTCATTATGATCAGCGGCGTGAGAGCAAATGGAATACACGATGGGGCCCTGATGATAAGGAAACTGAAGGCTTTCGTGAGAAGCGGGTGGACTCTGGAAGAGATGGTGATTTGCATCTTGACAAAAATTTCTCTCATGTGTCCAATTACGGGAAAAATGACAGGGATGGAGATCATTATCGCCCATGGAGGTCAAGTTCCGCTCAAGGTCGAGGTAAGGGAGAGCCGCCTCATCATCAAACCCAAACTCCAAGCAAACAAGTCCCTGCATTTTCCCATCGTGGACGTGCAGACAACACGCCTCCTACCTTCTCTTTAGGTCGTGGAATCATCAGTTCTGGTGTAAATCCTACCAATAGTGTCTATTCATCTCCCAATTATCTTGGAGCTTCTTCCGAGAAATCTGGAAGAGAGCCTTGTTACTACAAATATAGCAGGACAAAATTGCTAGATGTTTTCAGGACTACCAATTTGACATCACAGCAAACTTTAAAAGATGGATTTGTGCCTGTGCCTACTCTTACACTAGATGAACCTTTGGAGCCTCTTGCTCTTTGTGCACCAACTACGGAAGAAATGACTTTTCTTAAGGGGATTGATAAAGGGGAAATTGTCAGTAGTGGTGCACCTCAAGTGTCAAAGGATGGGCGAAACTCATCAGAATTTATGCAAGCAAGGCGAACAAAACTTGGTGTTTCACCTTCCCTAGGCAGTAGAGAAGATTTACCCCATGGGTTTGATGACTACAACGATGATAAAGATGACAGCACCACTAAACTTGGTCACACAAACTATTCAGAGGTCTCTACTGAGAGGCAGGTGCCTTATCACAGGCCACAGTCAAAAAATGAAGCCATTCAGGAACAGATGGGACATACTAGTGGCAATTTCAAATCTGAAGCTTTCAGAGAAGATGACAATGCTTTGAGAAAAACAGATGAGGTGCCCGGCAATAGGGAATCGAGTGTTAAGGGGGCTACCAATATTCATTCTAGCAGCACGTGGGATGCCTCATCACTTGAGCAATCCCTGAATACATCCTTGCCTGATTGGAGAGACAATCCCAATAATATTATTAGCTCAGGAACTCCTGACAAGGGTTGGGTACAGTCTTCAAAGAATCTTAGTGATGGGTGGGGAAGTAACACAACTACTCCATCTTATGCAAAGGATAATTCTAAATGGCAGTCCACGGAGGAATCCATCATTAGAAGGCAGCTTTCTGGGATTTTAGACAAGGAACAACTATCGCGGAAAACAGTTCAACCTGCTCCAGAGGATATGCAACTTCATTACATTGATCCCTCTGGTGCAATTCAGGGCCCTTTTGGTGGGGCTGACATTATTCAATGGTTTGAGGGTGGGTATTTTGGCTTAGATTTACCTGTCCGTCCGACAAATGCACCAAGTGACTTGCCATTTTCAGCTCTTGGTGATGTTATGCCTCATTTACGATCTAAAGCCAAGCCACCACCAGGATTTAGTGGACCGAAGCAGAATGAATTTGCAGATTCATTAGGTAACGCTAGTTATGGTAGCTTGGGGAAGCTTCATACTGGGTTGAATGAAATAGATACTATGAGGAACGAGACAAGGCATAAACATGGCTCAACGGTGGAAGCTGAAAACAGATTTTTGGAGTCACTTATGTCTGGCAATATAGGTTCTTCACCTCTCGAGAAGAGTGCCTTCTCTGAAGGTGTGCCAGGATATTTTGGAACTAATCCTAATAGTCTGTCTTCCTTGGGAATGGACAATGGAAATAACCTTTTCCTGTTGGCCAAAAGAATGGAACTTGAACGGCAAAGGTCTATGTCCAACCCTTATGCATTTTGGCCTGGAATAGATGCTACATCCAAGGTTTCTAAGCCGGATATTGGCCTAGATGATCCAATTCAGCAGGCCAAACTCTTGTCTTCAATCATAGACCATTCTCGTCAAACTTCTCATTCTCAGAGTCCTGACATGTCAGCCATTCTACAAGGCTTGTCTGACAAAGCACCTCCTGGCATTAATGAGGTTGCAGGGTGGTCAAAATTTGCTCATGCTCCCGATCCTCTCCAAAGTAAACTTGACTTGCACCATGAGCTTAACTTGTCTTCGCAGGCACCTTTTGGTTTCCAACAACAGAGATTGCAACCACAGCCGTCCTTGACAAATTTACTTGCCCAAGCTACTGATAATCCTACCTTAACTCCAGATAAGTTTCTTCCTTCCAGCTTATCTCAAGATCCACAACTGATAAGTAAATTGCAACAACAACACTTGTTGCAGTTGCATTCTCAAGTGCCTTTCTCTGCACAACAAATGTCATTGTTAGACAAACTTCTATTACTTAAGCAGCAGCAAAAACAAGAAGAGCAACAACAGTTATTACAGCAACAACAGTTGCTCTCGCAGGTTCTATCAGAACATCAGTCACGTCAGCATCTTATCGATCCATCTTTTGGACAGTTACAAGGTGCTCCTATACCTATTGGAAATGCATCTACTGATCCATCTCAAGTCCAGCAACCACGAGAGAAATTTCAAATTGGTTCACAGAAGCCCTTAAACGTCGTAACTGATCGTGCGATTCCCTTCGGAAATATGGCTTTGCAAGTCACCCAGGGAGCCAGTTACAATGTTAATCCCGAGGATCCTTCCCTTGCTCTTCCGCATCAAATGTTTGGAAATGTTCAGCAGAAGGGTTGGACTCCTGGTCTCCCCGAGCAGCTCACTGATACTCGTCCGAAAGATATGTTACCTGGATCTATAGTTGGTGAGGCCTCACTTTTTCCTGGGCTGACTAGCAAACAAATCGAGGATGTGAGTCATGTGCAAAAGTCATCTGATAGCCACACTGTTCAAGCTTTGGAGCAGATAGGAGAGGCCGTACCAAGGCTTGATGAAACTGCCACATCTCTTGCATCTGATGCCATGGTAGAACCTCTTCCTCTCAAGACTGCTGATATTTCAGTTGCTCTACAACCAGCAGAAGTTGATGATACTGAAGTTTCCATTCCCGATAGTTGCTCTACACAGACTGCTGATAGTGTACCTGTTCTGAAGGTTCAAGAAGCTAGTGTGCCTGTGCAAAAACTTGAAAGGGATGGATACAAAGATGATACCTCCTTGGAGACAGAATTGAAAAATGTTGAAGTACAAGAACCTAAAAAATCCTCTGATAAAAAGACCAAGAAGCAAAAATCTTCGAAGTCACTTTCCTCAGACCAGGCCAAGGACTCTAAGAATTCTGCAATTCAGCAGTCAAAGCAATCAAAAAGTGGGAAATCAGAAAATGATTTGAAATTGAAGGCAGATAATATCATGGGAAAAGCAAGTGATATGGCTTCCTCTCCTCGGAAGATCAGAGATGGGGATGATGGCAAAATTTCCATTGTGGACAATCAGCCAGTTCAAAGCTCTGCCTCTGCTATGAATACCTGGAGCGATGGTGACACTGTTCAAGTGAAGGATGATGCCAAACTAGTTGGGTCCGATTCTGTCCTTAACTCACAGACTCAATCTAGCCAAAGAGCTTGGAAAGTTGCCTCGAGTTTCAAGCCAAAGTCATTATTGGAAATTCAGGAGGAAGAGCAGAAAAGGGCACATACAGAAACGGCTGTATCAGAGATTTCCACTTCTATCACCTCTATGAGTTTATCAACTCCTTGGGCTGGGATTGTGAGCAGTTCAGACCCTAAAGCTTCCAAAGAAATTCATAAAGATTCTGTGATTTCAGAATCAAGTGAGAAACACGAAAATTTATTGACTTCGAGGAGTAGAAAGAGCCAATTGCATGATCTGCTGGCAGAAGACAATATGGAAAAGTCTGGTGCAAGTGATGTTCGTGTTTCTGACTCTGTACAGATTGCTTCTTCTCCTCGTGTTGTGGCCACACAGGCAGAACCCATGGACGACAATTTTATTGAGGCAAAAGACACCAAAAAGAGCCGCAAGAAGTCTGCCAAGGCTAAGGGCGTTGGTACCAAGCCGTCCGCACCAGTCCCTTCTGCCGATGTGCCTGTTGCTTCAAGTCCCATTGAGAAAGGGAAAATCTCCCGCCAGACCCAGCAGGAGAAGGAAGCAATGCCTGTCATTCCTTCTGGGCCTTCTTTTGGTGACTTTGTCCTCTGGAAGGGAGAAGCTGCTAACGTGGCCCCGGCTCCAGCATGGTCCAGTGACTCTGGGAAGGTTCCCAAACCCACTTCTTTGAGGGATATTCAGAAGGAGCAGGGAAGAAAAACCTCTGCTGCTGCTCAGCATTCTCATCAAATCCCCACTCCCCAAAAGGCTCAGCCTAGTCAGGTTGGTCGTAGCAGCAGCACTAGTACTCCTTCCTGGGCTCTCTCTGCTTCTTCTCCATCAAAAGCTGCATCATCCCCCCTTCAGAATGTTCCTACTCAGTCAAATCATGGAGGTGATGATGACTTATTTTGGGGCCCCATTGAGTCAAAGAAAGAAAATCAGCAGGTTGATGTTCGTCTTGGGAGCAACAACTGGGGAAATAGGAATACTCCTGCAAAAGCAGCTTCGACTGGGGTGTTAAGTCGACAAAAATCATCTGGTGGGAAAGCTGACTATCTTTCATCCTCGCCGGCACAGTCATCTCAGAAAGGCAAACAAGATCCAGTTACCAAGCATTCAGAAGCTATGGGCTTCCGCGATTGGTGTGAGAGTGAATGTGTAAGGCTCATTGGGACAAAAGACACAAGTTTCTTGGAATACTGCTTGAAGCAATCGAGATCTGAGGCAGAGCTGCTTTTAATACAGAACCTTGGATCATATGATCCTGACCACGACTTCATTGATCAATTCCTAAATTACAAGGAGTTGCTTGCAGCAGATGTTCTTGAAATTGCTTTTCAAAGTCGCAACGACAGGAAGGTATCGGCTATTGCTTCCCGAGAAGTAAATTCAGGCAATGCTGGTGGGGATCTGGACCCTGATGTCCCTGTTGGCCGGGATGGGTCTGCAAAGAGTGGAGGAAAGAAGAAAGGAAAGAAAGGGAAGAAGGTTAGCCCATCGGTTTTGGGTTTCAATGTAGTTAGTAACAGAATCATGATGGGCGAGATTCAGACAATTGAAGATTAG 5568 44.85 MAGRFDFGSRPNLSVSSPLHAANDVQGSENPIPLSPQWLLPKPGESKHGIGTGENHFSHQPAYGNRMDMMKGSENYEDMNDTQKKKEVFRPSVTDSEIGRRDRWHDEERENNSSMRKDRWRDGEKEMGDGRKMDRWNEDSSTRVFRESRRGPSERWSDSNNRDNVHYDQRRESKWNTRWGPDDKETEGFREKRVDSGRDGDLHLDKNFSHVSNYGKNDRDGDHYRPWRSSSAQGRGKGEPPHHQTQTPSKQVPAFSHRGRADNTPPTFSLGRGIISSGVNPTNSVYSSPNYLGASSEKSGREPCYYKYSRTKLLDVFRTTNLTSQQTLKDGFVPVPTLTLDEPLEPLALCAPTTEEMTFLKGIDKGEIVSSGAPQVSKDGRNSSEFMQARRTKLGVSPSLGSREDLPHGFDDYNDDKDDSTTKLGHTNYSEVSTERQVPYHRPQSKNEAIQEQMGHTSGNFKSEAFREDDNALRKTDEVPGNRESSVKGATNIHSSSTWDASSLEQSLNTSLPDWRDNPNNIISSGTPDKGWVQSSKNLSDGWGSNTTTPSYAKDNSKWQSTEESIIRRQLSGILDKEQLSRKTVQPAPEDMQLHYIDPSGAIQGPFGGADIIQWFEGGYFGLDLPVRPTNAPSDLPFSALGDVMPHLRSKAKPPPGFSGPKQNEFADSLGNASYGSLGKLHTGLNEIDTMRNETRHKHGSTVEAENRFLESLMSGNIGSSPLEKSAFSEGVPGYFGTNPNSLSSLGMDNGNNLFLLAKRMELERQRSMSNPYAFWPGIDATSKVSKPDIGLDDPIQQAKLLSSIIDHSRQTSHSQSPDMSAILQGLSDKAPPGINEVAGWSKFAHAPDPLQSKLDLHHELNLSSQAPFGFQQQRLQPQPSLTNLLAQATDNPTLTPDKFLPSSLSQDPQLISKLQQQHLLQLHSQVPFSAQQMSLLDKLLLLKQQQKQEEQQQLLQQQQLLSQVLSEHQSRQHLIDPSFGQLQGAPIPIGNASTDPSQVQQPREKFQIGSQKPLNVVTDRAIPFGNMALQVTQGASYNVNPEDPSLALPHQMFGNVQQKGWTPGLPEQLTDTRPKDMLPGSIVGEASLFPGLTSKQIEDVSHVQKSSDSHTVQALEQIGEAVPRLDETATSLASDAMVEPLPLKTADISVALQPAEVDDTEVSIPDSCSTQTADSVPVLKVQEASVPVQKLERDGYKDDTSLETELKNVEVQEPKKSSDKKTKKQKSSKSLSSDQAKDSKNSAIQQSKQSKSGKSENDLKLKADNIMGKASDMASSPRKIRDGDDGKISIVDNQPVQSSASAMNTWSDGDTVQVKDDAKLVGSDSVLNSQTQSSQRAWKVASSFKPKSLLEIQEEEQKRAHTETAVSEISTSITSMSLSTPWAGIVSSSDPKASKEIHKDSVISESSEKHENLLTSRSRKSQLHDLLAEDNMEKSGASDVRVSDSVQIASSPRVVATQAEPMDDNFIEAKDTKKSRKKSAKAKGVGTKPSAPVPSADVPVASSPIEKGKISRQTQQEKEAMPVIPSGPSFGDFVLWKGEAANVAPAPAWSSDSGKVPKPTSLRDIQKEQGRKTSAAAQHSHQIPTPQKAQPSQVGRSSSTSTPSWALSASSPSKAASSPLQNVPTQSNHGGDDDLFWGPIESKKENQQVDVRLGSNNWGNRNTPAKAASTGVLSRQKSSGGKADYLSSSPAQSSQKGKQDPVTKHSEAMGFRDWCESECVRLIGTKDTSFLEYCLKQSRSEAELLLIQNLGSYDPDHDFIDQFLNYKELLAADVLEIAFQSRNDRKVSAIASREVNSGNAGGDLDPDVPVGRDGSAKSGGKKKGKKGKKVSPSVLGFNVVSNRIMMGEIQTIED 1855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27560281 27569416 + MELO3C010934.2.1 Cme03g01966 323977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01966 1855 Pfam GYF domain 595 630 IPR003169 GO:0005515
Cme03g01966 1855 SUPERFAMILY GYF domain 581 648 IPR035445 -
Cme03g01966 1855 MobiDBLite consensus disorder prediction 1654 1700 - -
Cme03g01966 1855 MobiDBLite consensus disorder prediction 425 460 - -
Cme03g01966 1855 MobiDBLite consensus disorder prediction 392 532 - -
Cme03g01966 1855 MobiDBLite consensus disorder prediction 1453 1532 - -
Cme03g01966 1855 MobiDBLite consensus disorder prediction 1191 1311 - -
Cme03g01966 1855 MobiDBLite consensus disorder prediction 405 424 - -
Cme03g01966 1855 MobiDBLite consensus disorder prediction 1654 1706 - -
Cme03g01966 1855 SMART gyf_5 592 650 IPR003169 GO:0005515
Cme03g01966 1855 MobiDBLite consensus disorder prediction 1191 1234 - -
Cme03g01966 1855 MobiDBLite consensus disorder prediction 1545 1640 - -
Cme03g01966 1855 MobiDBLite consensus disorder prediction 1 268 - -
Cme03g01966 1855 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1855 - -
Cme03g01966 1855 MobiDBLite consensus disorder prediction 1292 1311 - -
Cme03g01966 1855 MobiDBLite consensus disorder prediction 1572 1630 - -
Cme03g01966 1855 MobiDBLite consensus disorder prediction 10 33 - -
Cme03g01966 1855 CDD GYF 591 648 IPR003169 GO:0005515
Cme03g01966 1855 MobiDBLite consensus disorder prediction 1797 1832 - -
Cme03g01966 1855 ProSiteProfiles GYF domain profile. 591 642 IPR003169 GO:0005515
Cme03g01966 1855 MobiDBLite consensus disorder prediction 1393 1422 - -
Cme03g01966 1855 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1855 - -
Cme03g01966 1855 Coils Coil 948 968 - -
Cme03g01966 1855 MobiDBLite consensus disorder prediction 1386 1422 - -
Cme03g01966 1855 MobiDBLite consensus disorder prediction 1235 1253 - -
Cme03g01966 1855 MobiDBLite consensus disorder prediction 462 482 - -
Cme03g01966 1855 Gene3D - 579 660 IPR035445 -
Cme03g01966 1855 MobiDBLite consensus disorder prediction 485 532 - -
Cme03g01966 1855 MobiDBLite consensus disorder prediction 1355 1374 - -
Cme03g01966 1855 MobiDBLite consensus disorder prediction 71 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01966 - - - cmo:103487961 3492.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01966 Cme-Chr3:27560281 Cme11g02345 Cme-Chr11:30469128 2.50E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g930 Blo01g01558 . Bda01g00536 Bda03g00257 Bpe02g00397 Bpe04g00211 Bma04g00206 Bma01g02315 Cmo05g00241 Cmo12g00428 . . . Car12g00452 Sed11g1026 . Cpe07g00430 Bhi04g00258 Tan02g1949 Cmetu03g2269 . . . Lcy13g1995 Cla08g01498 Cam08g1988 Cec08g1563 Cco08g1700 Clacu08g1678 . Cre08g1461 Cone4ag1904 Cone7ag1818 . . . . . Cme03g01966 . . . . . . . . . . . Cma12g00478 Cma05g00232 Car05g00194 . Cpe11g00193 . . . . . . . . . . . . . . . Lsi08g01403 Csa02g02043 Chy03g01470 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004078 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 44