Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01971 ATGGTATCGGCAGAGAGTAATTCTCCAACGGCGATGGTTACCGCATCTTCCCCGCCAGCTGTTGATGAAGTCGAGATAATCGACACCGTGACTCCAGCAAAGAAGAAGCGGAATCTCCCAGGGATGCCAGATCCAACTGCGGAGGTTATAGCTCTGTCGCCAAAATCGCTTCTAGCAACAAACCGATTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGACCAGAACCTGCAGCTTCACCGGCGCGGCCACAACTTACCTTGGAAGCTCCGGCAAAGGACGAGCAATGAAATTCGAAAACGAGTCTACGTCTGTCCAGAACCTTCTTGCGTGCATCATAATCCGGCTAGGGCACTGGGCGACCTAACCGGCATTAAAAAGCACTTCTCTAGAAAGCACTGCGAGAAGAAGTGGAAGTGCGAGCGGTGCTCCAAGAAATACGCCGTTCAATCGGATTGGAAAGCGCATATGAAAACCTGTGGGACTAGAGAATATAAATGCGATTGTGGAACTTTGTTTTCTAGGAGGGATAGTTTCATTACGCATCGGGCTTTTTGCGATGCTTTGGCTTTCGCCAGCTCGGATACCAATGTTATTGCCGCCGCCGCCGCCGCCGTTGCCACCGCTGTGGTTGCTTCTTCGCCATTGGCCACCGTGCCGGTGTCTCCTGGTTTGTCAATTCAAAGCTCAGAACCACCGGACATTCCCATGGGGCCTCCGCCATTAACACCAGCAGCGACAAGCTTAACCTCAGCCGTGGCCTCCACCGTTAACAAAAACAGCCCAACAAATGGCGGTGGTGCAAGCTTTTTCGCTGGTGTATTTTCTTCTTCTCCTCCCACTGTTACAAGTGCTCCCCCTAATCCGCCCCATCAACTCACCACCGGCGTCAACCGATCAGACGGTGGCAATGATCCCTCTACCACCGCCATTGAGCCCACATCGCTCTCTCTCTCAACATCCCTCTTCCTCTCATGTAGAGCCTCAGCCTCATCGGGCTCAACCTCAGCCTCTTCCATTTTCCAAGACCATACTCCACATTACTCTTTGTCCCCTCAACCCGCCGCCATGTCCGCCACTGCCTTGCTGCAGAAGGCTGCCCAAATGGGCGTCACCAGCTCCAACGCCTCCTCTTTGCTTCGTGCCTCTGGGTTATCGTTGTCGCAGTCTCCTGGCCCCGCCATCTCCATGACGGCTGGGCTCGGACTTGGATTCGGCAACGAACCCACCACGCGGGATCTCCTAGGACTGGGCATGGGTGGAGGAGGAGGAGGAGGTGGTGGGGTTTCCGGCAATGGTATTTCTGCTCTTTTCACGTCGTTTGATGGTTGTGACGTTGAAACTGCTTCGCCTTACGGCGGCGGCGGGAGTAATGGCTTATGA 1386 54.33 MVSAESNSPTAMVTASSPPAVDEVEIIDTVTPAKKKRNLPGMPDPTAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAFASSDTNVIAAAAAAVATAVVASSPLATVPVSPGLSIQSSEPPDIPMGPPPLTPAATSLTSAVASTVNKNSPTNGGGASFFAGVFSSSPPTVTSAPPNPPHQLTTGVNRSDGGNDPSTTAIEPTSLSLSTSLFLSCRASASSGSTSASSIFQDHTPHYSLSPQPAAMSATALLQKAAQMGVTSSNASSLLRASGLSLSQSPGPAISMTAGLGLGFGNEPTTRDLLGLGMGGGGGGGGGVSGNGISALFTSFDGCDVETASPYGGGGSNGL 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27590275 27593743 + MELO3C010929.2.1 Cme03g01971 323982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01971 461 Gene3D Classic Zinc Finger 63 106 - -
Cme03g01971 461 Gene3D Classic Zinc Finger 118 194 - -
Cme03g01971 461 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 4 439 - -
Cme03g01971 461 Pfam Zinc-finger of C2H2 type 63 85 - -
Cme03g01971 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Cme03g01971 461 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 4 439 - -
Cme03g01971 461 SMART c2h2final6 104 134 IPR013087 -
Cme03g01971 461 SMART c2h2final6 139 159 IPR013087 -
Cme03g01971 461 SMART c2h2final6 63 85 IPR013087 -
Cme03g01971 461 MobiDBLite consensus disorder prediction 280 313 - -
Cme03g01971 461 MobiDBLite consensus disorder prediction 226 247 - -
Cme03g01971 461 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Cme03g01971 461 SUPERFAMILY beta-beta-alpha zinc fingers 62 160 IPR036236 -
Cme03g01971 461 MobiDBLite consensus disorder prediction 289 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01971 Cme-Chr3:27590275 Cme07g01703 Cme-Chr7:22570601 1.95E-113 dispersed
Cme01g00730 Cme-Chr1:7159658 Cme03g01971 Cme-Chr3:27590275 5.45E-26 transposed
Cme08g00763 Cme-Chr8:5101980 Cme03g01971 Cme-Chr3:27590275 3.65E-33 transposed
Cme12g00482 Cme-Chr12:8275347 Cme03g01971 Cme-Chr3:27590275 1.59E-24 transposed
Cme12g01807 Cme-Chr12:24542528 Cme03g01971 Cme-Chr3:27590275 8.69E-74 transposed
Cme12g02049 Cme-Chr12:25956162 Cme03g01971 Cme-Chr3:27590275 6.04E-75 transposed
Cme03g01971 Cme-Chr3:27590275 Cme08g00831 Cme-Chr8:5504754 8.63E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41083 PF12874 zf-met 0.0033 CL0361 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01971 K25869 - cmo:103487955 804.283