Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01981 ATGGCTTCCACATCAAGTTTTTTCCTTCTGTTAGTTGTGTTGTCTCTTGGAAATTTGGCTTTTGCGACTGTTTTTACCCTTCAGAATCATTGCAGCTATACACTATGGCCGGGAACACTCTCAGGCAATGGCGCAGCAGTGCTTGGCGACGGCGGATTCCCTCTAGCTCCCGGTACGTCGATGCAATTGACTGCTCCCCCGGGCTGGTCCGGGAGGTTCTGGGCAAGAACTGGCTGCGACTTCGATAGCTCTGGCAATGGGAAATGCCAGACGGGTGACTGCGGCGGGACGCTTAAATGTACCGGCGGCGGCATGCCCCCGGTCACGCTGGCGGAGTTCACTATCGGCTCAAGCAGTAACAATATGGATTTCTACGACATTAGCCTCGTCGACGGCTACAATGTGGGTATGGGCGTCCGGGCAAACGGAGGCACCGGCGACTGCCAGTACGCCGGCTGCGTCTCGGACGTAAATGGAATCTGCCCGTCGGAGTTGCAGGTAACCAACTCAGGCTCGGTGGTGGCCTGTAAGAGCGCATGCGCCGCCTTCAATACGCCGGAATTTTGCTGCACGAATGATCACTCGACGCCGCAGACATGCCCTCCGACGAAGTACTCAGAGATGTTCAAGAACGCCTGTCCGTCGGCGTACAGCTATGCATACGACGACGCTTCGAGCACGTGCACATGCACCGGGTCCGACTACTTGATTAGCTTTTGCCCGTCGGGTTGA 732 56.56 MASTSSFFLLLVVLSLGNLAFATVFTLQNHCSYTLWPGTLSGNGAAVLGDGGFPLAPGTSMQLTAPPGWSGRFWARTGCDFDSSGNGKCQTGDCGGTLKCTGGGMPPVTLAEFTIGSSSNNMDFYDISLVDGYNVGMGVRANGGTGDCQYAGCVSDVNGICPSELQVTNSGSVVACKSACAAFNTPEFCCTNDHSTPQTCPPTKYSEMFKNACPSAYSYAYDDASSTCTCTGSDYLISFCPSG 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27651381 27652454 - MELO3C010919.2.1 Cme03g01981 323992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01981 243 Pfam Thaumatin family 29 241 IPR001938 -
Cme03g01981 243 ProSiteProfiles Thaumatin family profile. 22 243 IPR001938 -
Cme03g01981 243 CDD TLP-PA 24 240 - -
Cme03g01981 243 PANTHER OS03G0233200 PROTEIN 19 241 IPR001938 -
Cme03g01981 243 SUPERFAMILY Osmotin, thaumatin-like protein 24 242 IPR037176 -
Cme03g01981 243 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Cme03g01981 243 PRINTS Pathogenesis-related protein signature 72 83 IPR001938 -
Cme03g01981 243 PRINTS Pathogenesis-related protein signature 85 114 IPR001938 -
Cme03g01981 243 PRINTS Pathogenesis-related protein signature 123 139 IPR001938 -
Cme03g01981 243 PRINTS Pathogenesis-related protein signature 231 240 IPR001938 -
Cme03g01981 243 PIRSF PR5 1 243 IPR001938 -
Cme03g01981 243 SMART tha2 25 241 IPR001938 -
Cme03g01981 243 ProSitePatterns Thaumatin family signature. 85 100 IPR017949 -
Cme03g01981 243 PANTHER PATHOGENESIS-RELATED PROTEIN 5 19 241 - -
Cme03g01981 243 Gene3D Thaumatin 23 241 IPR037176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01981 - - - csv:101217945 481.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01981 Cme-Chr3:27651381 Cme08g00938 Cme-Chr8:6173985 1.52E-87 dispersed
Cme04g01947 Cme-Chr4:27115925 Cme03g01981 Cme-Chr3:27651381 1.24E-70 dispersed
Cme03g01981 Cme-Chr3:27651381 Cme06g02378 Cme-Chr6:30996366 4.85E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g889 . . . . . . . . Cmo05g00228 . . . . . . . . Bhi04g00279 . . . Hepe10g0162 . . . . . . . . . . . . . . . . Cme03g01981 Blo17g00815 Blo18g00825 Bda08g01300 . . Bpe05g00077 Bma01g00772 Bma05g00106 . . . . Cma05g00222 Car05g00183 . Cpe11g00183 . . . . . . . . . . . . . . . Lsi08g01419 Csa02g02024 Chy03g01487 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012457 1 2 2 1 1 1 1 1 1 2 0 1 0 1 1 0 1 0 1 1 1 3 1 1 0 1 0 1 1 1 29