Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01984 ATGGCAAGCGGGCTTGGGGAATCGACGAGTAGGCAACCTCAAAGTCCTTCTTGTTCCGATAACAATGGTGATGCTAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTATGTGGTCATCTTTTCTGTTGGCCATGTCTTTATAAGTGGCTGCATATTCATTCTCATCCCCAGGAATGTCCAGTTTGCAAGGCTATCATTGAAGAGCAAAAATTGGTTCCTTTATATGGCAGGGGGAAGACATCGACTGACCCGAGATCGAAAGGTATTCCTGGAATTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCCCCAGAACCAAATCCTTTTCCTCACAATGGGTTTGGATTCATGGGAGGACTTGGAGGGTTTGCCCCAATGGCATCGACGAGGTTTGGCAATTTTACTTTGTCTGCAGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGCGCTAACTTTCCTTATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCATGCCCATGGATACTATCACCAGCTTCGTCAAGGTCAGCAAGATTACTATCTGAAGCGCCTGCTTTTGTTGATTGGTTTTTTTGTTCTTCTTGCCCTAATCTGGCAATAG 693 45.02 MASGLGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKGIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHAHGYYHQLRQGQQDYYLKRLLLLIGFFVLLALIWQ 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27660739 27662175 + MELO3C010916.2.1 Cme03g01984 323995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01984 230 SUPERFAMILY RING/U-box 26 83 - -
Cme03g01984 230 PANTHER OS12G0636000 PROTEIN 2 230 - -
Cme03g01984 230 MobiDBLite consensus disorder prediction 1 20 - -
Cme03g01984 230 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Cme03g01984 230 CDD RING-HC_AtRMA_like 28 72 - -
Cme03g01984 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 230 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cme03g01984 230 MobiDBLite consensus disorder prediction 84 122 - -
Cme03g01984 230 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Cme03g01984 230 Pfam Zinc finger, C3HC4 type (RING finger) 29 70 - -
Cme03g01984 230 SMART ring_2 30 70 IPR001841 -
Cme03g01984 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01984 Cme-Chr3:27660739 Cme11g01195 Cme-Chr11:18091813 1.52E-28 dispersed
Cme04g01692 Cme-Chr4:24228697 Cme03g01984 Cme-Chr3:27660739 1.05E-23 transposed
Cme04g02252 Cme-Chr4:29595967 Cme03g01984 Cme-Chr3:27660739 7.74E-30 transposed
Cme03g01984 Cme-Chr3:27660739 Cme07g00407 Cme-Chr7:2672871 5.64E-28 wgd
Cme03g01984 Cme-Chr3:27660739 Cme08g00502 Cme-Chr8:3101352 1.01E-92 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01984 K10666 - csv:101221027 416.001