Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01987 ATGGGTTGGCTAAGCAAAATTTTGAAAGTTGGATCTGGTCATAGAATAGCTGAAAAGAATTACCAAGCAAACTATGAAGAAGATCCGAATTCTCATCTGCCCTCGACTTCTGAGGGTTTGTGGTCAGAGAATGAGAACGAAGACATTGATCGTGCAATTGCAATATCTCTTGTAGAAGAAAGTCAGAAGGCAAATAATGTGATTGATCGTGATTATCAATTGGAAGAAGATGAACTTCTTGCCAAAGCAGTACAAGAAAGCCTCAATTTGGAGTCTCCTCCACAATATACAAGTGGAAACATGTATCAACCTTATCTACCTCAATATCAGTTTGGTTCCAGAATATGTGCTGGCTGCTATAATGAGATTGGCTATGGACGTTACTTGAACTGCCTCAATGCATTTTGGCATCCAGAATGTTTCCGTTGTCGCGCTTGCAACCTCCCAATTTCAGACTATGAGTTTTCTACTTCTGGGAATTTTCCATATCATAAATCTTGCTACAAGGAGAATTATCACCCAAAATGTGATGTTTGCAAGCACTTTATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACACCCTTTCTGGATCCAGAAATACTGTCCGTCTCATGAATACGATGGCACTCCTCGATGTTGCAGTTGCGAACGAATGGAGCCACAAGAGGTTAAGTATATTCCACTTCATGATGGTCGAAAGCTGTGCCTTGAGTGTCTCGACTCTACAATCATGGACACGAAAGAATGCCAACCTCTTTATCGCGATATACAAGAATTTTATGATGGTTTGAATATGAAAGTAGAGCAGGATGTTCCATTGCTTTTGGTCGAAAGGCAAGCACTGAACGAAGCAAGAGAAGGAGAAAAACATGGCCATTATCATATCCCCGAGACAAGAGGACTGTGTCTTTCGGAGGAACAAACCATTAGCACTGTTTTAAGACGGCCTAGATATGAAAGGGGAAATCGAGTATCGAGCACGATGTCGGAGCCCTACAAATTGACACGCCATTGTGAGGTCACTGCAATTCTCATTCTGTTTGGTCTTCCTAGGTTGCTTACTGGGTCGATTTTAGCTCATGAGATGATGCACGCATGGCTACGTCTTAAAGGTTTTCGAACTCTCAGTCAAGACGTGGAAGAAGGTATCTGTCAAGTTCTAGCGCACATGTGGTTGAGTACCGAACTCATGTCTTCCCAAGACTACAACGATGTCGCCTCGACCTCATACTCTGCTGCTCCCACAACATCATCAAGAAGAAAAACCATGTCCAAATTTGAGAGAAAACTTGGGGAGTTCTTTAAACACCAGATAGAATCGGACATGTCCCCAGTGTATGGAGATGGATTCAGAGCTGGGCAGATGGCTGTGCATAAATACGGTCTTCGGACTACCCTCGATCATATTCAAATGACCGGGACCTTTCCTTATTGA 1443 42.69 MGWLSKILKVGSGHRIAEKNYQANYEEDPNSHLPSTSEGLWSENENEDIDRAIAISLVEESQKANNVIDRDYQLEEDELLAKAVQESLNLESPPQYTSGNMYQPYLPQYQFGSRICAGCYNEIGYGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNFPYHKSCYKENYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPSHEYDGTPRCCSCERMEPQEVKYIPLHDGRKLCLECLDSTIMDTKECQPLYRDIQEFYDGLNMKVEQDVPLLLVERQALNEAREGEKHGHYHIPETRGLCLSEEQTISTVLRRPRYERGNRVSSTMSEPYKLTRHCEVTAILILFGLPRLLTGSILAHEMMHAWLRLKGFRTLSQDVEEGICQVLAHMWLSTELMSSQDYNDVASTSYSAAPTTSSRRKTMSKFERKLGEFFKHQIESDMSPVYGDGFRAGQMAVHKYGLRTTLDHIQMTGTFPY 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27671171 27676630 - MELO3C010913.2.1 Cme03g01987 323998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01987 480 ProSiteProfiles LIM domain profile. 114 174 IPR001781 -
Cme03g01987 480 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 75 94 IPR003903 -
Cme03g01987 480 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 44 63 IPR003903 -
Cme03g01987 480 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 109 141 - -
Cme03g01987 480 ProSitePatterns LIM zinc-binding domain signature. 116 150 IPR001781 -
Cme03g01987 480 Gene3D Cysteine Rich Protein 110 188 - -
Cme03g01987 480 SMART lim_4 115 167 IPR001781 -
Cme03g01987 480 SMART uim 44 63 IPR003903 -
Cme03g01987 480 SMART uim 75 94 IPR003903 -
Cme03g01987 480 Pfam LIM domain 116 170 IPR001781 -
Cme03g01987 480 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 142 196 - -
Cme03g01987 480 PANTHER PROTEIN DA1-RELATED 2 1 480 IPR045218 -
Cme03g01987 480 MobiDBLite consensus disorder prediction 24 41 - -
Cme03g01987 480 CDD LIM_DA1 116 168 - -
Cme03g01987 480 PANTHER PROTEIN DA1-LIKE 1 480 - -
Cme03g01987 480 MobiDBLite consensus disorder prediction 22 41 - -
Cme03g01987 480 Pfam Protein DA1 265 475 IPR022087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01987 - - - csv:101221261 1004.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00934 Cme-Chr10:6975685 Cme03g01987 Cme-Chr3:27671171 0 transposed
Cme11g00300 Cme-Chr11:3225210 Cme03g01987 Cme-Chr3:27671171 5.50E-140 transposed
Cme03g01987 Cme-Chr3:27671171 Cme08g00508 Cme-Chr8:3127292 1.38E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g879 . . . . . . . . Cmo05g00224 Cmo12g00443 . . . Car12g00468 . . Cpe07g00446 Bhi04g00285 . . . . . . Cla08g01521 Cam08g2012 Cec08g1588 Cco08g1723 Clacu08g1701 . Cre08g1483 Cone4ag1886 Cone7ag1797 Cone17ag1316 Cone20ag0158 . . . Cme03g01987 Blo17g00819 . Bda08g01302 . . Bpe05g00075 . Bma05g00105 . . . Cma12g00498 Cma05g00218 Car05g00178 . Cpe11g00180 . . . . . . . . . . . . . . . Lsi08g01424 Csa02g02018 Chy03g01493 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001147 2 4 2 2 2 2 2 2 2 2 2 2 4 2 2 3 2 6 3 2 2 2 2 2 2 3 2 9 2 3 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41085 PF12315 DA1-like 1.00E-95 CL0126 Cme TR