Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01991 ATGATCTCAAAAACCCGTTTCCTAGTTTCCTCTAATCTTCTTTTTCTTGTTCTAATTTCAATTACACTTAAAACAGAGGCTAAAAAATGTTCAAAATCATGTTCTTCCCATCAGACCCCTTACGATTTTCCTTACCCATTTGGCTTCTCCGCCGGCTGTCCAATCCGCCTCAACTGCAGCCACGACGGCGCCGCCATGATTGGAGAATTCCCTGTCGAGTTTATTAACTCCGATCATATCAAAGTTGTGATTAAAGCGAAATGCAACCGGGGGTTCCACACAATTCACCAATTCTTTAGCCCCCATTACGCCCCAACGGCCAACAACGCTGTTCTTTTACAAAACTGTTCTTCTCCGATTTCGACTTGCTTTTTGCCCACGACGATGGTTCAGACCAAATTCGAATCCCCCGATTGCTCTGTGAATCGCTCAAGCATAAGCTGCTATACCCAAAACGCCACCGGGTCTGCCGGTTTCTTGGACTTCAAAAACCTCACCGGAACCCACTGCGATTACCTTCTGTCGTCGATTTCCGCGGAGGAGCTCAATGGTAACATCTCTACCGGAATTTCTCTGGAAATTCAAACAGTGGATCTTGGGTGGTGGCTGCAGGGAGGCTGCCACCACTCCTGCCATGAAGATGCTAACTGTACAGAACTTAAATCACCCATTAACGGGATGTTGTCTCATCGTTGCCGTTGCCGGAAAGGTCTGATCGGCGATGGATATTTGGCCGGCACCGGCTGCCGGAAAGCCTTAAATTGCTACACTACCAAGTACGCTATCGGCGAATGCGGAACATCAACGACAGCCACAAGAACCGCCATTCTCATCGGAACCTTAATCGGCGGAGCTTCCGTACTTCTTGCTCTCGCTTTATTATGCTTCTTCATCCGCCGTCGTTCCAATCCCAAATCTATACACCTCAACAAAATCACCAAACGTCGCCTCTCCGAAGCCACTGCTGGCGCCGGCAAATCTACCATCCATCTCTACACTTACAAAGAGATCCAAAAAGCCACCCACAACTTCTCCGACGACTACCGTCTCGGCACCGGTGCATACGCCACCGTCTACGCCGGTAGATTACGCAACGGCGAATGGGTCGCCATCAAACGCCTCAAAAATCGAGACCCCGACACTATCCACCAAGTCCTCAACGAAATCAACCTCATCTCCTCCGTCAGCCACCCTAACCTCGTCCGTCTCCTCGGCTGCTCCATGGAATCCGGCGACCAAATCCTCGTCTACGAATTCATGCCCAACGGTACTCTGTCTCAACATTTACAAAAACAGAGAGGCACTGGCCTCCCCTGGCTCGTCCGTCTCGACATCGCCATCGAAACGGCTAACGCAATCGCCCATCTACATTCTGCAATTAACCCTCCGATCTTCCACAGAGACATTAAATCCAGCAACATACTACTCGATCAGAATCTCAAATCGAAAGTAGCGGACTTCGGGCTTTCAAGGTTAGGGATGGCCGAAATTTCCCATATCTCGACGGCTCCTCAAGGGACACCGGGGTATCTCGATCCACAATACCATCAAGATTTTCATCTCTCCGACAAGAGTGACGTGTACAGCTTGGGCGTGGTTCTTGTTGAACTGATCACCGCCATGAAAGTAGTGGATTTCTGCAGGGCGAAAGAGGAGGTAAATTTGGCGGCTTTGGCAGCCGATCGGATAGGGAATGGGCGGGTTAGGGAAATTATCGACCCGTTGATGGATATGGAAGGAGATGAATGGGGAATTTCGTCGGTAGAGAAGGTGGCGGAGGTGGCGTTCAGATGCTTGGCATTTCATAGGGATGTAAGGCCGTCAATGGTGGAGGTGGCAGCGGAGCTGGAGGAGATACGACGGAGCAGGTGGGAAGAAGGGGGATTGAAATGTAAGGAAATGGAATTAGTAGTTGAAAGTGGAAGCTCAAAGTCTAGCCATGGAGGAGGAGATTACTTTTCAAGAGGCTCTATTGAAGATTCATGGCGGAGTGAACAGAGCTCGCCGTCGTCCAGTAGTTTGTTAAATAATGTCCTTTTATGA 2043 49.63 MISKTRFLVSSNLLFLVLISITLKTEAKKCSKSCSSHQTPYDFPYPFGFSAGCPIRLNCSHDGAAMIGEFPVEFINSDHIKVVIKAKCNRGFHTIHQFFSPHYAPTANNAVLLQNCSSPISTCFLPTTMVQTKFESPDCSVNRSSISCYTQNATGSAGFLDFKNLTGTHCDYLLSSISAEELNGNISTGISLEIQTVDLGWWLQGGCHHSCHEDANCTELKSPINGMLSHRCRCRKGLIGDGYLAGTGCRKALNCYTTKYAIGECGTSTTATRTAILIGTLIGGASVLLALALLCFFIRRRSNPKSIHLNKITKRRLSEATAGAGKSTIHLYTYKEIQKATHNFSDDYRLGTGAYATVYAGRLRNGEWVAIKRLKNRDPDTIHQVLNEINLISSVSHPNLVRLLGCSMESGDQILVYEFMPNGTLSQHLQKQRGTGLPWLVRLDIAIETANAIAHLHSAINPPIFHRDIKSSNILLDQNLKSKVADFGLSRLGMAEISHISTAPQGTPGYLDPQYHQDFHLSDKSDVYSLGVVLVELITAMKVVDFCRAKEEVNLAALAADRIGNGRVREIIDPLMDMEGDEWGISSVEKVAEVAFRCLAFHRDVRPSMVEVAAELEEIRRSRWEEGGLKCKEMELVVESGSSKSSHGGGDYFSRGSIEDSWRSEQSSPSSSSLLNNVLL 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27689823 27694218 - MELO3C010909.2.1 Cme03g01991 324002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01991 680 Gene3D Laminin 208 244 - -
Cme03g01991 680 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 639 IPR045274 GO:0007166
Cme03g01991 680 Pfam Protein kinase domain 346 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01991 680 Gene3D Phosphorylase Kinase; domain 1 315 419 - -
Cme03g01991 680 SMART serkin_6 344 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01991 680 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Cme03g01991 680 SUPERFAMILY Protein kinase-like (PK-like) 326 617 IPR011009 -
Cme03g01991 680 ProSiteProfiles Protein kinase domain profile. 344 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01991 680 CDD STKc_IRAK 350 619 - -
Cme03g01991 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Cme03g01991 680 Gene3D Transferase(Phosphotransferase) domain 1 420 641 - -
Cme03g01991 680 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 24 639 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01991 - - - csv:101218893 1223.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01991 Cme-Chr3:27689823 Cme03g00184 Cme-Chr3:2239235 3.83E-90 dispersed
Cme11g02309 Cme-Chr11:30156612 Cme03g01991 Cme-Chr3:27689823 1.10E-42 dispersed
Cme03g01991 Cme-Chr3:27689823 Cme08g00521 Cme-Chr8:3232224 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g862 . . . . . . . . Cmo05g00222 Cmo12g00445 . . . Car12g00472 . . Cpe07g00450 Bhi04g00293 . . . . . Lcy13g2018 Cla08g01525 . . . . . . Cone4ag1879 Cone7ag1788 Cone17ag1312 . . . . Cme03g01991 . Blo18g00827 . Bda01g01485 Bpe02g01680 . Bma01g00774 . . . . Cma12g00502 Cma05g00216 Car05g00176 . Cpe11g00178 . . . . . . . . . . . . . . . Lsi08g01427 Csa02g02013 Chy03g01496 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001068 3 4 2 2 3 2 4 2 2 2 2 2 4 2 1 4 2 6 4 2 2 2 1 2 1 2 2 2 2 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64767 PF00069 Pkinase 2.90E-40 CL0016 Cme PK