Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01993 ATGTTTATCAATAATATGGACTACTCCAACACCACCACCGCCACCCCACCACCGCCATTGCCGGACCTTTCCTTGCACATAAGTCCACCCTCGGATTCCGGCAATCATTATTTCAACCACCACCACCACCACCAACCTCAAATCTATAGCAACCATTTCAAAAGAGGCCCAAAAATGGGATTTGGATCAATTAAAAGAAGCATCAGAGCTCCAAGAATGAGATGGACTACCACTCTCCATGCCCATTTTGTCCACGCCGTTCAGCTCCTTGGTGGCCATGAAAGGGCAACACCAAAATCAGTCTTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGTACTGACAAAGCCACTGACTCAGCCATGAAGAACCAAAGGCAAGAAATTGATGGAAGTGGTGTTTCAAATTGTGAGATATCTAATAATCCATCACTTACAATGTGGAAAAGCCCTAATAAAAAAATGAAGTTGTTCTGTTCATCAATGGAGACAAACCAAGAGATGACGAGCAGATGGAATCAATTTTGCAACAACACTATTGGAAACAACCAGCAGCAGCAAGAGAAGGACCGACACAATGGAAATGCAAATATGAAAATCTCGAGTGGTGTGAACAATCACAATAATAATAGTAATAATAATCTTAACTTAGATTTCACTTTGGGATGCCCTAATTATTCTCTAACAATCCATTCTAATCCTCACTCTTCATCTACTGAACTTCCTCTTCTCAAATGCTAA 783 41.0 MFINNMDYSNTTTATPPPPLPDLSLHISPPSDSGNHYFNHHHHHQPQIYSNHFKRGPKMGFGSIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKATDSAMKNQRQEIDGSGVSNCEISNNPSLTMWKSPNKKMKLFCSSMETNQEMTSRWNQFCNNTIGNNQQQQEKDRHNGNANMKISSGVNNHNNNSNNNLNLDFTLGCPNYSLTIHSNPHSSSTELPLLKC 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27705381 27708586 - MELO3C010906.2.1 Cme03g01993 324004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01993 260 Gene3D - 70 127 - -
Cme03g01993 260 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 41 243 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cme03g01993 260 MobiDBLite consensus disorder prediction 197 225 - -
Cme03g01993 260 SUPERFAMILY Homeodomain-like 68 125 IPR009057 -
Cme03g01993 260 Pfam Myb-like DNA-binding domain 72 123 IPR001005 -
Cme03g01993 260 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 41 243 - -
Cme03g01993 260 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 71 124 IPR006447 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01993 Cme04g00674 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01993 Cme-Chr3:27705381 Cme04g00674 Cme-Chr4:7270936 7.82E-44 dispersed
Cme03g01993 Cme-Chr3:27705381 Cme04g00145 Cme-Chr4:1097100 6.48E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41086 PF00249 Myb_DNA-binding 9.80E-06 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01993 - - csv:101219131 448.743