Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02003 CATCCGAGTACTGAAAGGGGTAACTACAATTTGACATCTAAGAATTCGTCGTCTAAGAGTGCTCCAACGAGCATTTTACCGAGTCCTGTTGTTAGCCCACGAACATCGTATAATGGAAATCATGTTGTTTCTGGTTTGACTCACCATGAATATCAGGAATCTCCTTCCAATAATTCTCCCAAAGTACCACCCCTTAAAACTGCACTTAGTTCTCAACCCTTTCCTCTCCATAGCCCAACAGCTCGAAGTTCCATAAGTAATTCCCGACCTCCTAACGATATGACATTTCCCCTGCATCCTAAGTTACAAAAGGATAATAGCATAGATCGGTCTGAAAGCCATGCTCATGTCAATGCCCACCCATTGCCCCTTCCTCCTCCGTTAGTGGCCTCTTCACAAGCATCTCCACAATCTCTTCCGTCAAATGTTCATCATGTTATTGAGAAGCCATACATTTCATCGATGAAAGGTCAGTGGCAAAAAGGAAAGCTAATTGGGCGTGGTACGTTTGGAAGTGTTTATCTTGCAACCAACAGAGAAACTGGAGCCTTATGTGCAATGAAAGAAGTTGACCTCATTCCTGATGATCCTAAATCTGCTGAATGCATAAAGCAACTAGAGCAGGAAATTGAAGTTCTTAGTCATCTTAAACATCCGAACATTGTACAGTATTATGGAAGTGAAATAATTGGTGATTATTTCTATATATATTTGGAGTATGTTTATCCTGGGTCAATAAATAAATATGTTCGTGAACATTGTGGAGCCATTACTGAATCTATTGTTCGCAATTTCACTCGCCATATTCTATCTGGACTGGCTTACTTGCATAGCACAAAAACAATTCACAGAGATATCAAAGGTGCAAACTTGCTCGTTGATTCATCAGGCGCTGTCAAACTTGCAGATTTTGGGATGGCAAAACATCTGACAGGGCAGTATGATCTTTCTTTGAAGGGTAGTCCGTACTGGATGGCTCCGGAGGTCATAAAAGCTGCTATGTTGAAAGATGCCAACCCTGATCTTGCTTTGGCAGTTGACATTTGGAGTCTGGGTTGCACCATAATTGAAATGCTGAATGGAAAACCTCCGTGGTGTGAGTTTGAAGGGCATCAAGCTATGTTCAAGGTGTTGAATAAAACCCCACCTATCCCAGAAAAGCTATCTCCTGAAGGGAAAGACTTCCTCCAGTGTTGCTTTCAGAGGAATCCAGCTGACAGACCATCTGCCGTGGTGCTCCTTGACCATCCTTTCTTAAGATCCTCAAGTGACTCAAATGTTTCGATCCCAACGTCAGCATTTTCAACAATGAAACTCTTGGAAAAATTGTTAAATCCGAAGGATCCCCTTAATCCTAAAGGAGATCAGGCACAAAACTCCCCTGGAACTTCGACTTCAAATGACTATTTGACGTGCCGTAGCCCTTCAACAAACATTTCAAGCAACATTCCTGCAAGTGCAGTCGTCAACCATCACTTTTCTATTTCAAGGACTCATAAAAGGGAAGTGCCGCACCTCTGA 1521 42.34 HPSTERGNYNLTSKNSSSKSAPTSILPSPVVSPRTSYNGNHVVSGLTHHEYQESPSNNSPKVPPLKTALSSQPFPLHSPTARSSISNSRPPNDMTFPLHPKLQKDNSIDRSESHAHVNAHPLPLPPPLVASSQASPQSLPSNVHHVIEKPYISSMKGQWQKGKLIGRGTFGSVYLATNRETGALCAMKEVDLIPDDPKSAECIKQLEQEIEVLSHLKHPNIVQYYGSEIIGDYFYIYLEYVYPGSINKYVREHCGAITESIVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGAVKLADFGMAKHLTGQYDLSLKGSPYWMAPEVIKAAMLKDANPDLALAVDIWSLGCTIIEMLNGKPPWCEFEGHQAMFKVLNKTPPIPEKLSPEGKDFLQCCFQRNPADRPSAVVLLDHPFLRSSSDSNVSIPTSAFSTMKLLEKLLNPKDPLNPKGDQAQNSPGTSTSNDYLTCRSPSTNISSNIPASAVVNHHFSISRTHKREVPHL 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27752940 27756984 + MELO3C010896.2.1 Cme03g02003 324014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02003 506 ProSiteProfiles Protein kinase domain profile. 159 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g02003 506 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 496 - -
Cme03g02003 506 MobiDBLite consensus disorder prediction 445 475 - -
Cme03g02003 506 Gene3D Transferase(Phosphotransferase) domain 1 156 449 - -
Cme03g02003 506 MobiDBLite consensus disorder prediction 1 93 - -
Cme03g02003 506 SMART serkin_6 159 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g02003 506 MobiDBLite consensus disorder prediction 1 139 - -
Cme03g02003 506 MobiDBLite consensus disorder prediction 452 475 - -
Cme03g02003 506 Pfam Protein kinase domain 160 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g02003 506 SUPERFAMILY Protein kinase-like (PK-like) 154 432 IPR011009 -
Cme03g02003 506 ProSitePatterns Protein kinases ATP-binding region signature. 165 188 IPR017441 GO:0005524
Cme03g02003 506 PANTHER - 1 496 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02003 Cme-Chr3:27752940 Cme09g01564 Cme-Chr9:20609817 3.72E-111 dispersed
Cme06g00569 Cme-Chr6:3618450 Cme03g02003 Cme-Chr3:27752940 2.00E-12 transposed
Cme09g00855 Cme-Chr9:11355542 Cme03g02003 Cme-Chr3:27752940 6.87E-75 transposed
Cme05g01769 Cme-Chr5:26710454 Cme03g02003 Cme-Chr3:27752940 4.56E-32 transposed
Cme03g02003 Cme-Chr3:27752940 Cme08g00551 Cme-Chr8:3459611 5.48E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64768 PF00069 Pkinase 1.20E-67 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02003 - - cmo:103487921 993.03