Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02009 ATGGTTTCTGACAACATCTCTGTTGGTTTATTAGATAACTTCAAAATGAAGAGGGTTCGAACCATCTTCACTCACACGTATCCTTATCCTCATGAACATTCACGGCATGCTATTATTGCGGTGGTGGTTGGTTGCTTATTTTTTATATCTTCCGACAACATGCACACTCTCATCGACAAATTGGATCAGAATATCAAATGGTGGTCTATATACTCATGTTTGCTTGGTTTCTTTTATTTCTTTTCATCACCATTTATTGGGAAGACCATTAAGCCCAGTTATTCAAATTTCAGTCGGTGGTACATAGCCTGGATTTTAGTGGCAGCTGTGTATCATCTTCCAAGTTTTCAGTCAATGGGAGTGGATATAAGGATGAACCTTTCAATGTTCATAACGATATATATCTCTTCCATTCTGTTTCTTACAGTATTTCATATTCTCTTTATTGGCCTCTGGTACGTTGGTCTGGTCTCACGTGTTGCTGGAAAGAGGCCTGAAATTTTGGCAATTTTTCAGAATTGTGCCGTCATAAGTATAGCCTGCTGTGTGTTTTACAGTCACTGTGGCAATCATGGTGTTTTGAAAGACAGAACACTTCAGCAGAGAACCTCCAATTGGTTTCCTTTCTGGAAAAAAGAAGAACGAAACACCTGGCTCGCAAAATTTCTTCGTGTAAATGAATTGAAGGATCAGGTGTGCTCGTCTTGGTTTGCCCCTGTTGGGTCTGCAAGTGATTACCCACTTTTGTCTAAGTGGGTAATTTATAGCGAGTTAGCTTGCAATGGCTCATGTGCTGGTCCATCTGATGGTATTTCACCCATATACTCACTCTGGGCTACTTTCATTGGTCTTTACATTGCGAACTATGTGGTGGAACGGTCAACAGGGTGGGCTCTTTCGCATCCTTTATCTGTTAAAGAATATGAAAAGCTGAAGAGAAAGCAAATGAAGCCTGATTTCCTTGACATGGTTCCTTGGTATTCAGGAACTTCTGCTGATTTATTCAAGACTGTTTTTGACCTACTTGTTTCAGTGACTGTCTTTGTTGGTCGATTTGACATGCGCATGATGCAGGCAGCAATGCGCAAGCTTGAAGATGGAGCTCAACAGGATGGTTTATTATACGATCACTATAGTGAAAGGGATGACTTATGGTTTGATTTCATGGCTGATACTGGGGATGGTGGGAATTCATCTTATAGTGTTGCACGTCTGCTTGCTCAACCTTCCATTCGTATAGTTGAAGATGATTCAGTTTTCAACTTACCACGTGGAGACATGTTACTCATAGGGGGGGATCTCGCATATCCTAATCCATCAGCATTCACATATGAAAGACGTCTCTTTTGTCCTTTCGAATATGCTCTTCAACCTCCGCCTTGGTATAAAGCAGACCATATAGCAGTGAAGAAGCCTGAGTTACCTCATTGGATGTCTGAACTGAAGCAATATGATGGACCTCAGTGTTATGTAATTCCTGGAAATCATGATTGGTTCGATGGACTTCATACCTATATGAGATACATATGTCATAAGAGCTGGTTGGGTGGTTGGTTTATGCCTCAGAAGAAGAGCTATTTTGCGCTGAAACTTCCTAAAAGATGGTGGGTATTTGGTTTGGATCTAGCACTCCATGGTGATATTGATGTCTACCAATTCAAATTCTTTTCAGAACTTGTGCAGGAAAAGATGGGAGCTGATGACTCGGTGATCATCATGACTCATGAACCAAATTGGTTGCTTGACTGTTACTGGAAGGATGTTTCTGGGAAGAATGTCTCGCACCTAATATGTGATTATCTCAAAGGGAGGTGTAAACTTCGTATTGCTGGAGACCTGCATCATTATATGCGCCATTCTGCTGTTAAATCAGACGAGTCTGTAAATGTGCACCATCTTCTTGTAAATGGCTGTGGTGGGGCTTTTTTACACCCAACCCATGTCTTTAGTAATTTTCGAAAATTTTGTGGGTCTACATACGAGTGCAAGGCTGCCTATCCTTCCTTTGAAGATTCTGGCCGGATTGCTTTAGGAAATATTTTGAAGTTCCGGAAGAAAAATTGGCAATTTGATTTCATTGGTGGCATCATATACTTTATATTGGTCTTTTCTATGTTCCCACAGTGTAAGCTTGATCACATCTTGCAAGAAGATTCATTTTCGGGTCACGTGAAGAGTTTCTTTGGCACCGTGTGGAATGCTTTTCTGTACATGCTGGGAGAGTCATATGTATCTTTAGCTGGTGCTATTGTATTATTGATTGTAGCAGTAACATTTATTCCTAGCAAAGCATCCAAGAAGAAACGGGTAATAATTGGGCTTCTTCATGTTTCTGCACATCTTGCTGCAGCGCTTTTTCTTATGTTGCTATTGGAACTGGGATTGGAGACATGCATCCGTCATGAATTACTAGCAACATCAGGCTATCACACTTTGTATGAATGGTACCGTACAAAGGAAGGCGAGCACTTTCCTGATCCGACTGGTCTTCGCGCCCGATTAGAAGAATGGACATATGGCCTATATCCAGCCTGTATAAAATATCTTATGTCTGCATTTGATATACCCGAGGTCATGGCTGTCTCACGTAGTAATATTTGCAAGAATGGAATGGATTCACTTTCCCGGGGAGGTGCTATGATATATTATGGGTCCGTCTTCTTTTATTTCTGGGTTTTCTCGACACCGGTCGTCTCCTTCGTTTTTGGAAGCTATTTATACATATGTATTAATTGGCTCCACATTCACTTTGATGAAGCATTCTCTTCACTAAGAATTGCAAATTATAAGTCATTCACTCGGTTTCACATCAACCGTGATGGTGATCTCGAAGTTTTTACTCTTGCTGTTGACAAGGTTCCGAAAGAATGGAAGTTGGATTCCAAGTGGGAAGGGGAGGCAAGAGAAATGGAAGGTGATCAGAAGATGAGTCACCAGAGGTCGTTTCCAAGCAAGTGGAAGGCGGCTGCACCGCATCAGGATCCAGTGCACACCGTTAAGATTGTCGATCAGTTTGTTATTAGACAAGGAAGAGGTAATGATAGATTTGGAGATGCCAATGGGTCAGAAATTCACTGA 3078 41.29 MVSDNISVGLLDNFKMKRVRTIFTHTYPYPHEHSRHAIIAVVVGCLFFISSDNMHTLIDKLDQNIKWWSIYSCLLGFFYFFSSPFIGKTIKPSYSNFSRWYIAWILVAAVYHLPSFQSMGVDIRMNLSMFITIYISSILFLTVFHILFIGLWYVGLVSRVAGKRPEILAIFQNCAVISIACCVFYSHCGNHGVLKDRTLQQRTSNWFPFWKKEERNTWLAKFLRVNELKDQVCSSWFAPVGSASDYPLLSKWVIYSELACNGSCAGPSDGISPIYSLWATFIGLYIANYVVERSTGWALSHPLSVKEYEKLKRKQMKPDFLDMVPWYSGTSADLFKTVFDLLVSVTVFVGRFDMRMMQAAMRKLEDGAQQDGLLYDHYSERDDLWFDFMADTGDGGNSSYSVARLLAQPSIRIVEDDSVFNLPRGDMLLIGGDLAYPNPSAFTYERRLFCPFEYALQPPPWYKADHIAVKKPELPHWMSELKQYDGPQCYVIPGNHDWFDGLHTYMRYICHKSWLGGWFMPQKKSYFALKLPKRWWVFGLDLALHGDIDVYQFKFFSELVQEKMGADDSVIIMTHEPNWLLDCYWKDVSGKNVSHLICDYLKGRCKLRIAGDLHHYMRHSAVKSDESVNVHHLLVNGCGGAFLHPTHVFSNFRKFCGSTYECKAAYPSFEDSGRIALGNILKFRKKNWQFDFIGGIIYFILVFSMFPQCKLDHILQEDSFSGHVKSFFGTVWNAFLYMLGESYVSLAGAIVLLIVAVTFIPSKASKKKRVIIGLLHVSAHLAAALFLMLLLELGLETCIRHELLATSGYHTLYEWYRTKEGEHFPDPTGLRARLEEWTYGLYPACIKYLMSAFDIPEVMAVSRSNICKNGMDSLSRGGAMIYYGSVFFYFWVFSTPVVSFVFGSYLYICINWLHIHFDEAFSSLRIANYKSFTRFHINRDGDLEVFTLAVDKVPKEWKLDSKWEGEAREMEGDQKMSHQRSFPSKWKAAAPHQDPVHTVKIVDQFVIRQGRGNDRFGDANGSEIH 1025
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27802852 27810395 + MELO3C010890.2.1 Cme03g02009 324020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02009 1025 PANTHER CALCINEURIN-LIKE METALLO-PHOSPHOESTERASE SUPERFAMILY PROTEIN 6 1014 - -
Cme03g02009 1025 SUPERFAMILY Metallo-dependent phosphatases 384 649 IPR029052 -
Cme03g02009 1025 Gene3D - 384 695 IPR029052 -
Cme03g02009 1025 Pfam Calcineurin-like phosphoesterase 386 615 IPR004843 GO:0016787
Cme03g02009 1025 PANTHER - 6 1014 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02009 - - - csv:101204257 2087.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02009 Cme-Chr3:27802852 Cme11g01091 Cme-Chr11:16073286 2.16E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g812 . . . . . . . . . Cmo12g00460 . . . Car12g00492 . . Cpe07g00463 Bhi04g00314 Tan02g1892 . . . . Lcy13g2034 Cla08g01543 Cam08g2037 Cec08g1614 Cco08g1747 Clacu08g1724 . Cre08g1508 . . Cone17ag0829 Cone20ag0174 . . . Cme03g02009 . . Bda08g01327 . . Bpe05g00062 . . . . . Cma12g00519 . . . . . . . . . . . . . . . . . . . Lsi08g01447 Csa02g01993 Chy03g01514 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007270 1 2 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 2 1 1 2 1 1 2 3 1 37