Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02019 ATGGGAATCTCAAACCTCTCTTACGAGGAATGTCGTCAGAAAAGAGTTGAAGAAAACAAGAAGAGAATGGAAGCCCTAAATTTGCCCTTACTTTCTCAAGCTCTCCTCGATTCTTCGCCTTCCAAGTCCTCCCCTAGTAAGCAGGTCAAGCCTCGCGTGATGCAGAAACAACTGGTGGTGGTGAGGAGGTCCAGTCGCGTAGCAAAGCAACCAACACCTGTTTACGCTGAAGTTCTTGTCGATCGTGTGGCGATCCCTAGAAGGATCTCCAGAGCAAGAGATTTTTCAGACCAGTTTTATGCTTCGGATGAAGCAAGAAAAAAAGCCTTTGAAAGAGCTCTTGAGTTACAATCTCGATTGGAGCCGAATTATCCCAGCTGTATAAAGTCGATGGTTCGGTCTCATGTTAGTGGTTGTTTCTGGCTGGGCCTTCCTTCTCATTTCTGCAAGACGCACCTTCCAAAGAATGATGGAGTAATGACTTTAATAGATGAAGATGGTGATGAGTATCCCATAATATATTTGGCGCGAAAAACAGGATTTAGTGGGGGATGGAAGGGTTTTTCAATTGCTCATAAGTTAGCTGATGGAGATGCTGTGGTTTTTCAACACATTAAACCTACAGCCTGCAAGGTGTACATCTTTAGGGTGAATGGTTCCAAACAAGAGAGTGATTCTAACAATAGCTAA 690 43.91 MGISNLSYEECRQKRVEENKKRMEALNLPLLSQALLDSSPSKSSPSKQVKPRVMQKQLVVVRRSSRVAKQPTPVYAEVLVDRVAIPRRISRARDFSDQFYASDEARKKAFERALELQSRLEPNYPSCIKSMVRSHVSGCFWLGLPSHFCKTHLPKNDGVMTLIDEDGDEYPIIYLARKTGFSGGWKGFSIAHKLADGDAVVFQHIKPTACKVYIFRVNGSKQESDSNNS 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27847566 27849346 + MELO3C010881.2.1 Cme03g02019 324030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02019 229 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677
Cme03g02019 229 CDD B3_DNA 125 216 IPR003340 GO:0003677
Cme03g02019 229 Pfam B3 DNA binding domain 128 217 IPR003340 GO:0003677
Cme03g02019 229 SUPERFAMILY DNA-binding pseudobarrel domain 120 219 IPR015300 -
Cme03g02019 229 SMART B3_2 127 218 IPR003340 GO:0003677
Cme03g02019 229 PANTHER B3 DOMAIN-CONTAINING PROTEIN 1 223 - -
Cme03g02019 229 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 1 223 IPR044837 -
Cme03g02019 229 Gene3D - 102 219 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02019 Cme-Chr3:27847566 Cme11g00289 Cme-Chr11:3111673 1.56E-37 dispersed
Cme03g02019 Cme-Chr3:27847566 Cme03g02021 Cme-Chr3:27851668 5.28E-130 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41090 PF02362 B3 6.20E-13 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02019 - - csv:101205233 350.517