Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02021 ATGGGGATCGCAAACCTCTCATATGAGGAATGTCGTCGCAAGAGACTCGAAGAAAACAAGAAGCGAATGGAAGCCCTAAATTTGCCCTTGCTTTCTCAAGCTCTCATCGATTCTTCCCCTTCCAAGTCCTCACCTAGTAAGCTCACCAAGCCTCGCGTGACTCAGAAACAACTCGTGGTGGTGAGGAGGTCCAGTCGCGTAGCGAAACAGTCAGCTCCTGTTTACGCCGAAGTTGTTATTAATCGCGTGGTGATTCCTAGAAGGATCTCTAAAGCTAGAGATTTATCGAATCGAGTTTATGCTTCGGATGGAGCAAGAAAAAGGGCTTTTGAAAGAGCTGAACAACTACAATCTGGGTTGGAGCCGAATTATCCCAGTTTTATAAAGTCAATGCTTCAGTCTCATGTTAGTGGTGGATTCTGGCTGGGTCTTCCTTCTCATTTCTGCAAGATTCACCTTCCAAATCGTGATGGAGTAATGACTTTAATAGATGAAGATGGTGATGAGTATCCGACAATATATTTAGCACGAAAAACAGGACTTAGTGGCGGATGGAAGGGTTTTGCAGTCGCTCATAAGTTGGCAGATGGGGATGCTGTGATTTTTCAATTCATTAAACCTACAACATGCAAGGTGCACATTCTTAGGGCCGCCAATAGTTCCACAGAAGATAGCGATTCTAACAGTAGCTAA 693 44.44 MGIANLSYEECRRKRLEENKKRMEALNLPLLSQALIDSSPSKSSPSKLTKPRVTQKQLVVVRRSSRVAKQSAPVYAEVVINRVVIPRRISKARDLSNRVYASDGARKRAFERAEQLQSGLEPNYPSFIKSMLQSHVSGGFWLGLPSHFCKIHLPNRDGVMTLIDEDGDEYPTIYLARKTGLSGGWKGFAVAHKLADGDAVIFQFIKPTTCKVHILRAANSSTEDSDSNSS 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27851668 27854094 + MELO3C010880.2.1 Cme03g02021 324032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02021 230 Pfam B3 DNA binding domain 127 217 IPR003340 GO:0003677
Cme03g02021 230 SMART B3_2 127 218 IPR003340 GO:0003677
Cme03g02021 230 CDD B3_DNA 125 216 IPR003340 GO:0003677
Cme03g02021 230 PANTHER B3 DOMAIN-CONTAINING PROTEIN 2 223 - -
Cme03g02021 230 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 223 IPR044837 -
Cme03g02021 230 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677
Cme03g02021 230 Gene3D - 102 220 IPR015300 -
Cme03g02021 230 SUPERFAMILY DNA-binding pseudobarrel domain 121 217 IPR015300 -
Cme03g02021 230 Coils Coil 6 26 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00041 Cme-Chr1:339525 Cme03g02021 Cme-Chr3:27851668 1.11E-79 dispersed
Cme03g02021 Cme-Chr3:27851668 Cme11g00289 Cme-Chr11:3111673 4.27E-36 dispersed
Cme03g02019 Cme-Chr3:27847566 Cme03g02021 Cme-Chr3:27851668 5.28E-130 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41091 PF02362 B3 1.50E-13 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02021 - - csv:101205473 404.445