Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02047 ATGGACGGTGGTGATGGGACTGTGAGGCTTGGAGCTGTGAACTTGAAGCCGGATCGGAACGCTTTTGATTTAGGTCCTGATGTCTCTGTTTCGTCTCCGGTGACACGGCAGAAAGCCGCTGCTGCTAAACAGTTTATTGAGAATCATTACAAGAACTATCTCCAAGGTCTTCAGGATCGCAAAGATAGACGGAGAACGCTTCAACGAAGAGCGCAAGAAGCGCAGATGTCGGTTGAAGAACAAGAAGAGATGTTGAGGAACTTGGAACGCAGAGAAACAGAATTTATGAGACTGCAAAGACGTAAAGTTGGAATCGATGACTTTGAACAATTAACGGTTATTGGCAAAGGTGCATTTGGCGAGGTTAGATTGTGTCGTGCAAAAGGAACTGGGGAAATTTTTGCCATGAAGAAGCTGAAGAAATCAGAGATGCTTAGCCGTGGGCAGGTTGAGCATGTTCGATCTGAGAGGAATTTACTTGCAGAGGTTGATAGTCGGTGCATTGTAAAACTCTTTTATTCTTTTCAAGATTCTGAATTCTTGTACCTTATTATGGAGTATTTACCTGGTGGTGACATTATGACATTGCTAATGAGAGAAGACATTCTGTCAGAGGATGTTGCTCGGTTTTACATAGCAGAGAGCATTTTAGCTATTCATTCAATTCATCAGCACAATTATATACATAGGGATATAAAACCAGATAACCTGATACTAGATAAAAATGGTCATCTCAAGCTTTCAGATTTTGGCTTGTGCAAGCCTCTGGATGATAAGTATTCAAGTATACTTTTGAATGATGAAGACCTAACCGCCCAGCAGTGCAAAAATGAAGGTCAAAGTCAGTCTGACTCTAATGGATCCCATTGGATGATGCCAAAAGAACAAATTCAGCAGTGGAAGCGTAATCGCCGTGCATTGGCCTTTTCAACTGTTGGGACTCTTGATTATATGGCACCTGAAGTGCTCCTTAAGAAAGGATACGGAATGGAGTGTGATTGGTGGTCATTAGGGGCCATTATGTATGAGATGCTTGCTGGTTATCCTCCTTTTTGTTCTGATGATCCAAGGATGACTTTCCGTAAGATAATAAATTGGAGAACTTGCCTGAAATTTCCCGAGGACCCAAAAATCTCGGAGGAAGCTAAGGACCTGATCAGCCACTTGCTTTGTGATGTTGAAACAAGGTTGGGAACAAGAGGAGTGGAAGAAATAAAGTCACATCCATGGTTCAAAGGCATTCAGTGGGATAAGCTTTATGAAATGGAAGCTGCATACAAACCAACCGTCACTGGTGAACTAGACACTCAGAACTTTGAGAAGTTTCCTGAAGTTCAAGACCCTCCCTCAGAAATGCCAACTGTTGGACCTTGGAGAAAGATGCTAACTTCAAAAGATACCAATTTCATTGGATTTACTTTTAAGAAGTCAAACGTCAAATCACTTGAGACTACAGCAGGTACAGATATACATTCAAACACGTCATCAAAATCACCATCTCTAGTTTCGTTGTTGGGTCGAATAGACTTGCAAGAAACTGTGATACCAGAAGTTGAACAAAAGCAGGAAGCATAA 1575 41.71 MDGGDGTVRLGAVNLKPDRNAFDLGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRRTLQRRAQEAQMSVEEQEEMLRNLERRETEFMRLQRRKVGIDDFEQLTVIGKGAFGEVRLCRAKGTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSEFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYIHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILLNDEDLTAQQCKNEGQSQSDSNGSHWMMPKEQIQQWKRNRRALAFSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLAGYPPFCSDDPRMTFRKIINWRTCLKFPEDPKISEEAKDLISHLLCDVETRLGTRGVEEIKSHPWFKGIQWDKLYEMEAAYKPTVTGELDTQNFEKFPEVQDPPSEMPTVGPWRKMLTSKDTNFIGFTFKKSNVKSLETTAGTDIHSNTSSKSPSLVSLLGRIDLQETVIPEVEQKQEA 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27974245 27979508 - MELO3C010857.2.1 Cme03g02047 324058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02047 524 ProSiteProfiles Protein kinase domain profile. 108 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g02047 524 ProSiteProfiles AGC-kinase C-terminal domain profile. 412 484 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cme03g02047 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Cme03g02047 524 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 510 - -
Cme03g02047 524 Coils Coil 57 101 - -
Cme03g02047 524 CDD STKc_NDR_like 106 475 - -
Cme03g02047 524 Pfam Protein kinase domain 108 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g02047 524 SMART pkinase_C_6 412 476 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cme03g02047 524 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 6 510 - -
Cme03g02047 524 SUPERFAMILY Protein kinase-like (PK-like) 85 463 IPR011009 -
Cme03g02047 524 Pfam Protein kinase C terminal domain 430 474 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cme03g02047 524 Gene3D Transferase(Phosphotransferase) domain 1 310 429 - -
Cme03g02047 524 Gene3D Transferase(Phosphotransferase) domain 1 192 260 - -
Cme03g02047 524 Gene3D Phosphorylase Kinase; domain 1 105 191 - -
Cme03g02047 524 Gene3D Phosphorylase Kinase; domain 1 430 440 - -
Cme03g02047 524 SMART serkin_6 108 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g02047 524 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02047 Cme-Chr3:27974245 Cme05g00575 Cme-Chr5:5821826 0 dispersed
Cme03g02047 Cme-Chr3:27974245 Cme02g00269 Cme-Chr2:2258759 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64769 PF00069 Pkinase 7.10E-65 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02047 K08790 - csv:101222805 1037.71