Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02053 ATGAATTTCAAAGATTTTGGGAATGACCCATCTGCCGGGAACGGCGGCGGAGGTGGAAGGCCTCCGGCGAACTATCCATTAGCGCGACAATCATCGATCTACTCACTGACCTTCGATGAGTTCCAAAGCATGGGTAGTATAGGAAAGGATTTTGGGTCAATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACAATGGCATCTTCTGCTGCTGCTGTTGGTAAAGAAGGGGGTGGTAGTGCTGGTGGTAGTAGTGGTTATTTGCAGAGACAGGGGTCTTTGACGCTGCCTCGAACACTCAGCCAGAAGAAGGTGGATGAGGTATGGAAGGATATAATCAATGAACATGCTAGTGCTAAAGACGGAGCTACCGTTGCTCCTAATTTGCAACAGAGGCAGCAAACTCTTGGGGAGGTGACCCTCGAAGAGTTTTTATTCAGAGCTGGAGTGGTGAGAGAGGATACTCAGGTGACTGCAAACCCCAACAATGGAGGGTTCTTTGGCAACAACACTGGTTTTGGAATTGCTTTTCAGCGGCAGGCGAAAGTTCCTGAAAATAACAATCACATTCAGATTCAATCGTCGAACTTATCGCTGAATGCCAATGGAGTTAGAGCACATCAGCCGCAGCCAATATTTCCAAAGCAGGCTACTTTGACTTATGGCTCTCAGTTGGCTTTACCCAGTGATGGGCAGCTGGCTAGTCCAGGAATTAGAGGAGGAATTATGGGGATTGCAGATCAAGGGCTGAATACAAATTTGATGCAAGGCTCTGCACTGCAAGGTGGAAGAATGGGAGTGGTCAATATAGCAGCTGCTCCGTTACCTATTGCCACAGAATCGCCTGGGAACCAACTATCCTCTGATGGAATCGGAAAGAGCAATGGTGATACCTCTTCAGTGTCTCCTGTGCCTTACGCGCTTAATGGTGGAATCAGGGGGAGGAGAGGTAATGGGATTGTCGACAAAGTTGTGGAGAGGAGGCAACGGAGAATGATTAAAAACCGAGAGTCTGCTGCAAGATCACGGGCGCGAAAGCAGGCTTACACAATGGAATTGGAAGCAGAAGTTGCAAAGCTAAAAGAGGAGAACCAAGAACTCCGTCAGAAACAGGCAGAAATCATGGAAATGCAGAAGAACCGGGCGTTGGAAGTAATGGATAAGCAACAAGGAATCAAGAAACAATGTTTAAGACGAACACAGACTGGCCCATGGTGA 1236 47.57 MNFKDFGNDPSAGNGGGGGRPPANYPLARQSSIYSLTFDEFQSMGSIGKDFGSMNMDELLKNIWSAEEMQTMASSAAAVGKEGGGSAGGSSGYLQRQGSLTLPRTLSQKKVDEVWKDIINEHASAKDGATVAPNLQQRQQTLGEVTLEEFLFRAGVVREDTQVTANPNNGGFFGNNTGFGIAFQRQAKVPENNNHIQIQSSNLSLNANGVRAHQPQPIFPKQATLTYGSQLALPSDGQLASPGIRGGIMGIADQGLNTNLMQGSALQGGRMGVVNIAAAPLPIATESPGNQLSSDGIGKSNGDTSSVSPVPYALNGGIRGRRGNGIVDKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELRQKQAEIMEMQKNRALEVMDKQQGIKKQCLRRTQTGPW 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28020718 28024405 + MELO3C010850.2.1 Cme03g02053 324064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02053 411 Pfam bZIP transcription factor 333 385 IPR004827 GO:0003700|GO:0006355
Cme03g02053 411 Gene3D - 331 388 - -
Cme03g02053 411 SMART brlzneu 329 393 IPR004827 GO:0003700|GO:0006355
Cme03g02053 411 CDD bZIP_plant_BZIP46 333 385 - -
Cme03g02053 411 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 336 351 IPR004827 GO:0003700|GO:0006355
Cme03g02053 411 SUPERFAMILY Leucine zipper domain 333 381 IPR046347 GO:0003700|GO:0006355
Cme03g02053 411 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 199 411 - -
Cme03g02053 411 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 5 174 - -
Cme03g02053 411 MobiDBLite consensus disorder prediction 1 26 - -
Cme03g02053 411 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 331 382 IPR004827 GO:0003700|GO:0006355
Cme03g02053 411 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 199 411 IPR043452 GO:0003700|GO:0045893
Cme03g02053 411 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 5 174 IPR043452 GO:0003700|GO:0045893
Cme03g02053 411 Coils Coil 349 386 - -
Cme03g02053 411 MobiDBLite consensus disorder prediction 287 307 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01118 Cme-Chr3:20638336 Cme03g02053 Cme-Chr3:28020718 3.80E-16 dispersed
Cme03g02053 Cme-Chr3:28020718 Cme11g01919 Cme-Chr11:27296746 5.43E-08 dispersed
Cme05g00381 Cme-Chr5:3031311 Cme03g02053 Cme-Chr3:28020718 3.93E-07 transposed
Cme06g02363 Cme-Chr6:30908343 Cme03g02053 Cme-Chr3:28020718 3.22E-18 transposed
Cme07g00903 Cme-Chr7:9420673 Cme03g02053 Cme-Chr3:28020718 1.82E-15 transposed
Cme01g00057 Cme-Chr1:439098 Cme03g02053 Cme-Chr3:28020718 4.45E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41092 PF00170 bZIP_1 3.80E-13 CL0018 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02053 K14432 - csv:101223043 730.709