Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02055 ATGGATATTGAGGAGATGGGAAAATTTGGAGAGAATTTTGAATATAATGAAATTGCAACTACTTTGGATTTTGGTTTTGGTAGTTCCAATATTGCTTCCACTTCACATCTTATTTTTCCTTCATTTAATAATATCCCACCAACCACTCTTTCTATGAATAACGCCACTCACCCTGTTGCACCGCCGTCTTTTCCGCCCTATTCCGCCGCTGCCCGGTGGAGATCCCATTTTCCAGCCACCCGCAATTCCGGCACGACGGGGGAGGAGGAAGTGGAAGGATCGGAATCAGAATCAATGGGCGGAGGGATGAGAGAGATGATATACAGAATAGCAGCAATGCAGCCAATAGAGATAGACCCAGAAGCAGTGAAGGCACCAAAGCGACGGAATGTTAAGATTTCAAAAGATCCACAGAGCGTAGCGGCAAGGCATAGAAGAGAGAGAATTAGCGAAAGAATCAGAATCCTTCAAAGAATAGTCCCAGGTGGCACCAAAATGGACACCGCTTCCATGTTAGACGAAGCCATCCATTACCTTAAGTTTTTGAAAAACCAACTCCATTCACTCCAAATCGCCGCCGCCTCCTCCTCCTCCTCCGCCTACGTCTTTCCCACCGTCGCTCATTATAATAATAAACAACACTTGATCCACTTTCCTCAATTCCCAACTCATCCACATCACCACCTGGACCAAGATGCTTGA 702 45.87 MDIEEMGKFGENFEYNEIATTLDFGFGSSNIASTSHLIFPSFNNIPPTTLSMNNATHPVAPPSFPPYSAAARWRSHFPATRNSGTTGEEEVEGSESESMGGGMREMIYRIAAMQPIEIDPEAVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYLKFLKNQLHSLQIAAASSSSSAYVFPTVAHYNNKQHLIHFPQFPTHPHHHLDQDA 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28033407 28034662 - MELO3C010848.2.1 Cme03g02055 324066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02055 233 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 40 217 - -
Cme03g02055 233 Pfam Helix-loop-helix DNA-binding domain 143 182 IPR011598 GO:0046983
Cme03g02055 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
Cme03g02055 233 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 40 217 IPR045843 GO:0003700|GO:0006355
Cme03g02055 233 SMART finulus 139 188 IPR011598 GO:0046983
Cme03g02055 233 Gene3D - 129 192 IPR036638 GO:0046983
Cme03g02055 233 MobiDBLite consensus disorder prediction 79 100 - -
Cme03g02055 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 192 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02055 Cme-Chr3:28033407 Cme11g00295 Cme-Chr11:3162208 2.00E-52 dispersed
Cme03g02055 Cme-Chr3:28033407 Cme07g00345 Cme-Chr7:2214088 2.37E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41093 PF00010 HLH 9.50E-07 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02055 - - csv:105434749 380.948