Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02060 ATGGTGCAGCGGGAAACCCTCTCTTCGCCTGAAGATTTCGCATTCGTCCTACGCGACATTGTAGCCGCGGCAGACTCCTCCCAGGAAGAAGTAGCCATGGCTGATCAGGTTCAACATCCGACTCTCTATCAGAAGGTTTCTGGTCAGCTCTCCCTTCAGTCGAGGGTTGCTTTGGGCTTCCGGGCTTGTGATGATGGCTTTAGGAATCCTGCACTCTATCAGAGACGTGCCCCAATCACCAATTATTCTAATGCTGCTTTTCAGTACCCTGCTGTGCAATCCTGTGCAGCTACAACTGACCTTTCTAGGGTTGCTTCAACTGCTTCCCCCATTTTTGTTGCTGCCCCTGCTGAGAAAGGAAACTTTATGATTGACTTTCTTATGGGTGGTGTGTCTGCTGCTGTGTCCAAGACAGCCGCTGCCCCAATTGAGCGTGTCAAACTCTTGATTCAAAATCAGGATGAGATGATTAAATCTGGACGTTTGTCTGAGCCATACAAGGGTATTGGTGATTGTTTTAAGCGCACAATCAAAGAGGAGGGTTTCGGTTCATTGTGGAGAGGAAACACTGCCAATGTCATCCGTTATTTCCCCACTCAAGCATTGAACTTTGCTTTTAAGGATTACTTCAAGAGACTTTTCAACTTCAAGAAAGACAGGGATGGTTACTGGAAATGGTTTGCTGGTAACCTGGCATCCGGTGGTGCAGCTGGTGCTTCATCTCTTCTTTTTGTTTACTCTCTTGACTATGCTCGTACCCGATTGGCAAATGACGCCAAAGCTGCCAAGAAGGGTGGAGAAAGGCAATTCAATGGATTGGTCGATGTCTACAGGAAGACATTGCAGTCTGATGGTATTGCTGGCCTTTACCGTGGATTTAACATTTCTTGCGTTGGTATCATCGTGTACCGTGGTTTATACTTTGGAATGTACGATTCTCTGAAGCCTGTTTTGTTGACCGGGAAGATGCAGGATAGTTTCTTCGCTAGCTTTGCCCTTGGTTGGCTCATCACCAATGGTGCTGGTCTCGCATCCTACCCAATTGACACTGTTCGTAGAAGAATGATGATGACATCTGGTGAAGCAGTGAAGTACAAGAGCTCATTGGATGCCTTCTCTCAGATCTTGAAGAACGAAGGTGCCAAGTCTCTCTTCAAGGGTGCTGGTGCTAACATTCTCCGTGCCGTTGCTGGTGCTGGTGTGCTTGCCGGTTACGATAAGTTGCAGGTGATCGTCTTCGGGAAGAAATACGGATCTGGTGGCGCTTAA 1269 47.6 MVQRETLSSPEDFAFVLRDIVAAADSSQEEVAMADQVQHPTLYQKVSGQLSLQSRVALGFRACDDGFRNPALYQRRAPITNYSNAAFQYPAVQSCAATTDLSRVASTASPIFVAAPAEKGNFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTIKEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVFGKKYGSGGA 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28073563 28076466 + MELO3C030119.2.1 Cme03g02060 324071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02060 422 ProSiteProfiles Solute carrier (Solcar) repeat profile. 225 317 IPR018108 -
Cme03g02060 422 ProSiteProfiles Solute carrier (Solcar) repeat profile. 120 213 IPR018108 -
Cme03g02060 422 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 34 422 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cme03g02060 422 Gene3D Mitochondrial carrier domain 123 418 IPR023395 -
Cme03g02060 422 Pfam Mitochondrial carrier protein 325 411 IPR018108 -
Cme03g02060 422 Pfam Mitochondrial carrier protein 121 217 IPR018108 -
Cme03g02060 422 Pfam Mitochondrial carrier protein 224 320 IPR018108 -
Cme03g02060 422 ProSiteProfiles Solute carrier (Solcar) repeat profile. 325 411 IPR018108 -
Cme03g02060 422 PRINTS Adenine nucleotide translocator signature 225 238 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cme03g02060 422 PRINTS Adenine nucleotide translocator signature 166 187 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cme03g02060 422 PRINTS Adenine nucleotide translocator signature 122 134 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cme03g02060 422 PRINTS Adenine nucleotide translocator signature 199 211 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cme03g02060 422 PRINTS Adenine nucleotide translocator signature 330 346 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cme03g02060 422 PRINTS Mitochondrial carrier protein signature 138 152 IPR002067 GO:0055085
Cme03g02060 422 PRINTS Mitochondrial carrier protein signature 290 308 IPR002067 GO:0055085
Cme03g02060 422 PRINTS Mitochondrial carrier protein signature 240 258 IPR002067 GO:0055085
Cme03g02060 422 PRINTS Mitochondrial carrier protein signature 125 138 IPR002067 GO:0055085
Cme03g02060 422 PRINTS Mitochondrial carrier protein signature 334 356 IPR002067 GO:0055085
Cme03g02060 422 PRINTS Mitochondrial carrier protein signature 188 208 IPR002067 GO:0055085
Cme03g02060 422 PANTHER ADP,ATP CARRIER PROTEIN 1, MITOCHONDRIAL-LIKE 34 422 - -
Cme03g02060 422 SUPERFAMILY Mitochondrial carrier 120 407 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00300 Cme-Chr1:2245551 Cme03g02060 Cme-Chr3:28073563 0 dispersed
Cme03g02060 Cme-Chr3:28073563 Cme12g01918 Cme-Chr12:25227726 9.68E-135 dispersed
Cme03g02058 Cme-Chr3:28068958 Cme03g02060 Cme-Chr3:28073563 2.25E-44 proximal
Cme03g02059 Cme-Chr3:28069243 Cme03g02060 Cme-Chr3:28073563 1.03E-47 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02060 K05863 - csv:101203733 742.265