Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02062 ATGTCTAATTATGCCTTCTTGAATGACCAGCTCTCGAAGCGGACATCCATTTTCGGTTTGCGTTTGTGGGTTGTTTTGGGTATTTGTGTTGGTGCCGCCATTGTTATTGTTCTGTTCCTCATTTCCTTATGGTTCACTTCCAGGCGTAACAGTTCCAATAAATCTAAACCCTCTTTGAACCCCATTATCCCAAATGTGTCTAAGGAAATCCAGGAAATACGGATTGACCATTCTCGGAATACAACTCATTCTGACCCTAAAGTTCAATTGGCTTCTAACCCTGAGCCTTTGCCGGAGGCAGAGCCTTTAGCGACGCTGCTTGAGACGGAAGAAGGAAGCCCACCTAGTGGACGCCATAGAATTCACATTGAAATTGGGAAGGACCATCGGATTTCTTACCCAGAGAGAGGTGGCGGTTCGTCCCACGGTAGTGGAGAGGCTCGGTCTGGTGATCAGGCGCCAATGACTGTGCCGGAGGTTTCGCATTTGGGTTGGGGGCATTGGTATACTCTCAGAGAGCTTGAGTATTCTACTAATAGTTTTGCGGATGAAAATGTAATTGGTGAAGGCGGATATGGTATTGTGTACCGTGGGGTTCTTGAGGACAACACCGTGGTAGCTATCAAAAATTTGCTCAATAACAGAGGACAAGCTGAGAAGGAGTTTAAGGTTGAAGTGGAAGCAATTGGACGTGTTCGCCACAAGAATCTGGTGCGTTTGCTTGGCTATTGTGCTGAAGGAGCTCACAGGATACTTGTCTATGAGTACATTGATAATGGGAACTTGGAACAGTGGCTTCATGGAGAAGTTGGACCTTGTAGCCCTCTAACATGGGACATTCGAATGAATATAATTGTTGGAACAGCGAAAGGGTTAACATACCTCCACGAGGGACTCGAGCCTAAGGTTGTTCACCGTGATATCAAGTCAAGTAACATTTTGCTTGACAAGCAGTGGAATCCGAAGGTCTCTGACTTCGGCCTAGCAAAGCTTTTAGGCTCAGAAAGGAGTTATGTAACAACTCGTGTGATGGGAACTTTCGGATACGTAGCTCCAGAATATGCAAGTACTGGCATGTTAAATGAAAAAAGTGATGTATATAGTTTTGGAATCCTCATTATGGAGATAATTTCAGGGAGAAATCCAGTAGATTATAGCCGTCCTTCAGGAGAGGTCAACCTAGTTGAGTGGCTTAAAACAATGGTTAGTAATCGAAACGCTGAGGGAGTTCTGGATCCTAAGTTGCCTGAGAAGCCTTCAACAAGGGCACTGAAGCGTGCTCTATTAGTAGCGTTACGGTGTGTGGATCCTAATGTTCAGAAGAGGCCTAAAATGGGGCATGTAATTCATATGCTTGAAGCAGACGAGTTTCCTTTCCGAGATGATCGTAGAGTGGGACGAGAACCAGGACGATCACTACTGAAGGAAAAGCTCATGGAAAGGCTTGTGAGTGAATCTGGAGAAAGCAGTGGGTACGAAAGTGGAGCAACGCAAGCAAGCCGACATCTATGGAGAAAGCAAGAACTTGAAGAACAACAGCCTCGCGAACCTCACACTTTAAGATGA 1566 45.47 MSNYAFLNDQLSKRTSIFGLRLWVVLGICVGAAIVIVLFLISLWFTSRRNSSNKSKPSLNPIIPNVSKEIQEIRIDHSRNTTHSDPKVQLASNPEPLPEAEPLATLLETEEGSPPSGRHRIHIEIGKDHRISYPERGGGSSHGSGEARSGDQAPMTVPEVSHLGWGHWYTLRELEYSTNSFADENVIGEGGYGIVYRGVLEDNTVVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRILVYEYIDNGNLEQWLHGEVGPCSPLTWDIRMNIIVGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNEKSDVYSFGILIMEIISGRNPVDYSRPSGEVNLVEWLKTMVSNRNAEGVLDPKLPEKPSTRALKRALLVALRCVDPNVQKRPKMGHVIHMLEADEFPFRDDRRVGREPGRSLLKEKLMERLVSESGESSGYESGATQASRHLWRKQELEEQQPREPHTLR 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28105142 28108567 - MELO3C010844.2.1 Cme03g02062 324073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02062 521 MobiDBLite consensus disorder prediction 487 501 - -
Cme03g02062 521 SMART serkin_6 181 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g02062 521 MobiDBLite consensus disorder prediction 77 96 - -
Cme03g02062 521 Gene3D Transferase(Phosphotransferase) domain 1 257 463 - -
Cme03g02062 521 Pfam Protein kinase domain 182 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g02062 521 SUPERFAMILY Protein kinase-like (PK-like) 161 453 IPR011009 -
Cme03g02062 521 Gene3D Phosphorylase Kinase; domain 1 154 256 - -
Cme03g02062 521 PANTHER RECEPTOR-LIKE KINASE PLANT 5 497 - -
Cme03g02062 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672|GO:0006468
Cme03g02062 521 MobiDBLite consensus disorder prediction 131 154 - -
Cme03g02062 521 MobiDBLite consensus disorder prediction 482 521 - -
Cme03g02062 521 PANTHER OS01G0323000 PROTEIN 5 497 - -
Cme03g02062 521 CDD STKc_IRAK 187 453 - -
Cme03g02062 521 ProSitePatterns Protein kinases ATP-binding region signature. 187 209 IPR017441 GO:0005524
Cme03g02062 521 ProSiteProfiles Protein kinase domain profile. 181 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g02062 521 MobiDBLite consensus disorder prediction 503 521 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01543 Cme-Chr1:20540304 Cme03g02062 Cme-Chr3:28105142 1.83E-180 dispersed
Cme03g02062 Cme-Chr3:28105142 Cme11g01574 Cme-Chr11:23333440 0 dispersed
Cme06g01031 Cme-Chr6:7466340 Cme03g02062 Cme-Chr3:28105142 8.50E-63 dispersed
Cme01g01426 Cme-Chr1:18142257 Cme03g02062 Cme-Chr3:28105142 6.83E-176 transposed
Cme03g02062 Cme-Chr3:28105142 Cme08g00582 Cme-Chr8:3680046 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64770 PF00069 Pkinase 2.70E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02062 - - csv:101203008 1000.73