Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme03g02062 | ATGTCTAATTATGCCTTCTTGAATGACCAGCTCTCGAAGCGGACATCCATTTTCGGTTTGCGTTTGTGGGTTGTTTTGGGTATTTGTGTTGGTGCCGCCATTGTTATTGTTCTGTTCCTCATTTCCTTATGGTTCACTTCCAGGCGTAACAGTTCCAATAAATCTAAACCCTCTTTGAACCCCATTATCCCAAATGTGTCTAAGGAAATCCAGGAAATACGGATTGACCATTCTCGGAATACAACTCATTCTGACCCTAAAGTTCAATTGGCTTCTAACCCTGAGCCTTTGCCGGAGGCAGAGCCTTTAGCGACGCTGCTTGAGACGGAAGAAGGAAGCCCACCTAGTGGACGCCATAGAATTCACATTGAAATTGGGAAGGACCATCGGATTTCTTACCCAGAGAGAGGTGGCGGTTCGTCCCACGGTAGTGGAGAGGCTCGGTCTGGTGATCAGGCGCCAATGACTGTGCCGGAGGTTTCGCATTTGGGTTGGGGGCATTGGTATACTCTCAGAGAGCTTGAGTATTCTACTAATAGTTTTGCGGATGAAAATGTAATTGGTGAAGGCGGATATGGTATTGTGTACCGTGGGGTTCTTGAGGACAACACCGTGGTAGCTATCAAAAATTTGCTCAATAACAGAGGACAAGCTGAGAAGGAGTTTAAGGTTGAAGTGGAAGCAATTGGACGTGTTCGCCACAAGAATCTGGTGCGTTTGCTTGGCTATTGTGCTGAAGGAGCTCACAGGATACTTGTCTATGAGTACATTGATAATGGGAACTTGGAACAGTGGCTTCATGGAGAAGTTGGACCTTGTAGCCCTCTAACATGGGACATTCGAATGAATATAATTGTTGGAACAGCGAAAGGGTTAACATACCTCCACGAGGGACTCGAGCCTAAGGTTGTTCACCGTGATATCAAGTCAAGTAACATTTTGCTTGACAAGCAGTGGAATCCGAAGGTCTCTGACTTCGGCCTAGCAAAGCTTTTAGGCTCAGAAAGGAGTTATGTAACAACTCGTGTGATGGGAACTTTCGGATACGTAGCTCCAGAATATGCAAGTACTGGCATGTTAAATGAAAAAAGTGATGTATATAGTTTTGGAATCCTCATTATGGAGATAATTTCAGGGAGAAATCCAGTAGATTATAGCCGTCCTTCAGGAGAGGTCAACCTAGTTGAGTGGCTTAAAACAATGGTTAGTAATCGAAACGCTGAGGGAGTTCTGGATCCTAAGTTGCCTGAGAAGCCTTCAACAAGGGCACTGAAGCGTGCTCTATTAGTAGCGTTACGGTGTGTGGATCCTAATGTTCAGAAGAGGCCTAAAATGGGGCATGTAATTCATATGCTTGAAGCAGACGAGTTTCCTTTCCGAGATGATCGTAGAGTGGGACGAGAACCAGGACGATCACTACTGAAGGAAAAGCTCATGGAAAGGCTTGTGAGTGAATCTGGAGAAAGCAGTGGGTACGAAAGTGGAGCAACGCAAGCAAGCCGACATCTATGGAGAAAGCAAGAACTTGAAGAACAACAGCCTCGCGAACCTCACACTTTAAGATGA | 1566 | 45.47 | MSNYAFLNDQLSKRTSIFGLRLWVVLGICVGAAIVIVLFLISLWFTSRRNSSNKSKPSLNPIIPNVSKEIQEIRIDHSRNTTHSDPKVQLASNPEPLPEAEPLATLLETEEGSPPSGRHRIHIEIGKDHRISYPERGGGSSHGSGEARSGDQAPMTVPEVSHLGWGHWYTLRELEYSTNSFADENVIGEGGYGIVYRGVLEDNTVVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRILVYEYIDNGNLEQWLHGEVGPCSPLTWDIRMNIIVGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNEKSDVYSFGILIMEIISGRNPVDYSRPSGEVNLVEWLKTMVSNRNAEGVLDPKLPEKPSTRALKRALLVALRCVDPNVQKRPKMGHVIHMLEADEFPFRDDRRVGREPGRSLLKEKLMERLVSESGESSGYESGATQASRHLWRKQELEEQQPREPHTLR | 521 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 28105142 | 28108567 | - | MELO3C010844.2.1 | Cme03g02062 | 324073 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme03g02062 | 521 | MobiDBLite | consensus disorder prediction | 487 | 501 | - | - | |
Cme03g02062 | 521 | SMART | serkin_6 | 181 | 459 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme03g02062 | 521 | MobiDBLite | consensus disorder prediction | 77 | 96 | - | - | |
Cme03g02062 | 521 | Gene3D | Transferase(Phosphotransferase) domain 1 | 257 | 463 | - | - | |
Cme03g02062 | 521 | Pfam | Protein kinase domain | 182 | 450 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme03g02062 | 521 | SUPERFAMILY | Protein kinase-like (PK-like) | 161 | 453 | IPR011009 | - | |
Cme03g02062 | 521 | Gene3D | Phosphorylase Kinase; domain 1 | 154 | 256 | - | - | |
Cme03g02062 | 521 | PANTHER | RECEPTOR-LIKE KINASE PLANT | 5 | 497 | - | - | |
Cme03g02062 | 521 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 303 | 315 | IPR008271 | GO:0004672|GO:0006468 | |
Cme03g02062 | 521 | MobiDBLite | consensus disorder prediction | 131 | 154 | - | - | |
Cme03g02062 | 521 | MobiDBLite | consensus disorder prediction | 482 | 521 | - | - | |
Cme03g02062 | 521 | PANTHER | OS01G0323000 PROTEIN | 5 | 497 | - | - | |
Cme03g02062 | 521 | CDD | STKc_IRAK | 187 | 453 | - | - | |
Cme03g02062 | 521 | ProSitePatterns | Protein kinases ATP-binding region signature. | 187 | 209 | IPR017441 | GO:0005524 | |
Cme03g02062 | 521 | ProSiteProfiles | Protein kinase domain profile. | 181 | 439 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme03g02062 | 521 | MobiDBLite | consensus disorder prediction | 503 | 521 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g01543 | Cme-Chr1:20540304 | Cme03g02062 | Cme-Chr3:28105142 | 1.83E-180 | dispersed | |
Cme03g02062 | Cme-Chr3:28105142 | Cme11g01574 | Cme-Chr11:23333440 | 0 | dispersed | |
Cme06g01031 | Cme-Chr6:7466340 | Cme03g02062 | Cme-Chr3:28105142 | 8.50E-63 | dispersed | |
Cme01g01426 | Cme-Chr1:18142257 | Cme03g02062 | Cme-Chr3:28105142 | 6.83E-176 | transposed | |
Cme03g02062 | Cme-Chr3:28105142 | Cme08g00582 | Cme-Chr8:3680046 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64770 | PF00069 | Pkinase | 2.70E-47 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme03g02062 | - | - | csv:101203008 | 1000.73 |