Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02064 ATGCAAGGGCAAAGGAGTAGTGTTGGTTCTTTGTCAGAAACAATAAACTTTGAACATGGATCTTCATCAAATAATCCTGGTAACCAACCGGTATACTGGAATAACGTGTGGAATCCAGCAGAAAACCGAATACCAGATTATTTATTACCTACTTCTGATGTAAATTCTGGATATGTAAACTCTGTGAGCCATGAACAACGAAGTTTGAGCCGATGGAGCTTGGGTGAACCTAGCTCTTGTGATATGCAAACTGAGATGCTGCCTGATGAGCAGAAAGCTGAAATTGGATGGTCTTCAATGGCTAGTGATGCAGATGGTCCTGTTACCGAAAACCGACTTTGTGAGCCATCAAATAATCCTTCACTGGGTCATGTGAATCTCAGCCCGCTGATTATACAAAATTCTAATTCTAATTCTAATGCTATTCCTCATAATCTCAACTTAAATTCAAGTTTTGTTAGTCATGGAGGTGACAATAGCAGAGTTAATGAAGGTACTAACGTGTATAAATCTAGTGGACCAGAAGAAGGGAGGATTTTATGTTCTAATGCGTCTGATCCTCTTCTACTTCCTTCTGGAAATAGTGGACTTCCAGTGGTTGGAAATGATGGTAGACCAGGCTCTTCATTGGATGGTCGGCGTGCGCCCTGCAAAAGAAAATCTATTGAAGGAAATGTTGCACAGTCCTCCCTAAGTGGAAGCAGTAACTACTCGCAACATATTGAAAGTGGTTCAGAAGCCCATCTTCCAGTGTTCCCTGGTCGCTACAACACAGGCAGTAGGATAAGCATACCTCCTCCACCAGCACGAATGAATCAGGCCCCTGTACGAGGTGCAGGTGAACTAACTTCCAACAACTTCTCTGAGTCAATTGTTGCTGAAAGCTCAGACAGTTCTCAAAGAAACTACCGTATAAGGATTAGTTCATCAAATGCACAAGATTCTTTCGCATCGGCAGGAACTGCTGTTAGGCATCCTGGGCCACCATCTTCCCAGCTGCCAGCTAGACTTCTACCTGCTGAACATATATTAGACTTGAGGCCAGCACCAGCTGTAGACAATGTATCAGCTCAAGGTCAGCCAATTATGATACATGTGCCTGCTTTACCTCGAAATTTGCAACCATATAGGTGGAATGGGAGCTCTACGTCCAGAAGTGGCAGTTCATCAAGCTCTGCAGGAGAGAGGCAGGTGGTGCAACGTGAAGAGGTGAGACCAAGCATCATGGGAAGAAATGTATCTGAACATCCTATGTTTCTCCCAGCAAATGAGCTGAGGGGTTTGGTTCGCAGTCCATCGAGTAGAGCTTTAGCATCTTCGAACTTGGCCATTCCTGGAAATGTTGCTTCTACATCCAGGGTTGGTTCAAGTTCAGGGGTACATCCCTCTTCTGGACCTTGGATTCCTCCTGAGAGTTCTCCTACACAGTTCCCCAGGAGGTTAACAGAATATGTTCGTAGGCAGTTATTTGCTTCTGCTACAAACGAGTCAGGAGGAAGGACAAGTAATTATTCACAGCGTTCAGGTTCTACTTCTGCCCAGGAGATGGTCCTTTCATCTGGATCTGGCCGCCGAGGGCACCATTTATTGCAACCGAGGTCTGCATTATGGATGGAAAGAAGAGGTGACGGAGGACTTGGTCTTCCCTATTCATTACGAACTTTGGCTTCTTCTGCTGAAGGAAGTGACAATAATAGACTTGTGTCTGAGCACCTTCGTAATGTCTTGGGCCTTGTTCGCAGGGGTGAAAGCTTACGAGTTGAGGATGTGATGATCCTGGACCAATCACTATTTTTTGGAATGGCTGATATTTATGATAGGCACAGGGACATGCGTCTAGACGTTGATAACATGTCGTATGAGGAATTGTTGGCATTGGAAGAGCGTATTGGGAATGTCAATACAGGACTAAACGAAGAGACGATAGTTGCTCGACTGAAACAAAAGAAGCATGTGAATGCTGTTGAGTCACAGGTGGAAGAAGAACCATGCTGTGTTTGTCAGGAGGAATACGTTGAAGGAGAAGACATTGGAACGCTGGAATGCGGGCATGACTTTCACACAGCTTGTATTAAGCAGTGGCTGATGCAGAAGAATCTGTGTCCCATATGCAAAACAACTGGTTTAGCAAGCCGAGAATGA 2142 44.82 MQGQRSSVGSLSETINFEHGSSSNNPGNQPVYWNNVWNPAENRIPDYLLPTSDVNSGYVNSVSHEQRSLSRWSLGEPSSCDMQTEMLPDEQKAEIGWSSMASDADGPVTENRLCEPSNNPSLGHVNLSPLIIQNSNSNSNAIPHNLNLNSSFVSHGGDNSRVNEGTNVYKSSGPEEGRILCSNASDPLLLPSGNSGLPVVGNDGRPGSSLDGRRAPCKRKSIEGNVAQSSLSGSSNYSQHIESGSEAHLPVFPGRYNTGSRISIPPPPARMNQAPVRGAGELTSNNFSESIVAESSDSSQRNYRIRISSSNAQDSFASAGTAVRHPGPPSSQLPARLLPAEHILDLRPAPAVDNVSAQGQPIMIHVPALPRNLQPYRWNGSSTSRSGSSSSSAGERQVVQREEVRPSIMGRNVSEHPMFLPANELRGLVRSPSSRALASSNLAIPGNVASTSRVGSSSGVHPSSGPWIPPESSPTQFPRRLTEYVRRQLFASATNESGGRTSNYSQRSGSTSAQEMVLSSGSGRRGHHLLQPRSALWMERRGDGGLGLPYSLRTLASSAEGSDNNRLVSEHLRNVLGLVRRGESLRVEDVMILDQSLFFGMADIYDRHRDMRLDVDNMSYEELLALEERIGNVNTGLNEETIVARLKQKKHVNAVESQVEEEPCCVCQEEYVEGEDIGTLECGHDFHTACIKQWLMQKNLCPICKTTGLASRE 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28116565 28122840 - MELO3C010842.2.1 Cme03g02064 324075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02064 713 MobiDBLite consensus disorder prediction 447 476 - -
Cme03g02064 713 MobiDBLite consensus disorder prediction 491 527 - -
Cme03g02064 713 CDD RING-H2_TTC3 663 705 - -
Cme03g02064 713 MobiDBLite consensus disorder prediction 248 283 - -
Cme03g02064 713 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 710 - -
Cme03g02064 713 MobiDBLite consensus disorder prediction 375 412 - -
Cme03g02064 713 MobiDBLite consensus disorder prediction 223 242 - -
Cme03g02064 713 MobiDBLite consensus disorder prediction 375 397 - -
Cme03g02064 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 708 IPR013083 -
Cme03g02064 713 SMART ring_2 664 704 IPR001841 -
Cme03g02064 713 ProSiteProfiles Zinc finger RING-type profile. 664 705 IPR001841 -
Cme03g02064 713 MobiDBLite consensus disorder prediction 447 463 - -
Cme03g02064 713 SUPERFAMILY RING/U-box 657 707 - -
Cme03g02064 713 Pfam Ring finger domain 664 705 IPR001841 -
Cme03g02064 713 MobiDBLite consensus disorder prediction 491 519 - -
Cme03g02064 713 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 710 IPR045191 GO:0061630
Cme03g02064 713 MobiDBLite consensus disorder prediction 191 216 - -
Cme03g02064 713 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02064 - - - csv:101203243 1339.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01694 Cme-Chr3:25637679 Cme03g02064 Cme-Chr3:28116565 7.31E-38 dispersed
Cme03g02064 Cme-Chr3:28116565 Cme07g01321 Cme-Chr7:18655884 1.23E-28 dispersed
Cme03g02064 Cme-Chr3:28116565 Cme04g00337 Cme-Chr4:2692786 1.79E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g742 . . . . . . . . . Cmo12g00503 . . . Car12g00516 . . Cpe07g00492 Bhi04g00371 Tan02g1796 . . Hepe08g1297 . Lcy13g2093 . . . . . . . . . . . . . . Cme03g02064 Blo17g00874 . . Bda01g01607 Bpe02g01796 . Bma01g00659 . . . . Cma12g00560 . . . . . . . . . . . . . . . . . . . . . Chy03g01557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55