Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02065 ATGGTATTAAACATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCTCTCTCCCTTGGCTGCAAACGCTTACGCCCTCTTGCTCCTAAACTTCAACAACCCACCTCCGATAACACAACCACCACCACCACCACCACCACCCTCACCACTTTCGACCTCAAAACCTTCATCAAACCCGATTGTGGTCCTCGCAAACCAGGTTCCTCCCATGATCACAGCAAAGACTCTTCCTCCTCTTCCTCTTCCCTCCAGACAGGGGTGGAAACGCACCCAGGAGGGACACGGTGGAATCCAACTCAAGAACAAATTGGGATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCCAATGCCCAACAAATCGAACACATCACTGCACAACTTGGCAACTACGGAAAGATTGAAGGCAAGAATGTTTTTTATTGGTTTCAAAATCATAAAGCCCGTGAACGACAGAAACAGAAACGCAACAGTCTTGGTCTTCCACACTCTCCAAGAACTCCTCCCCCTCCTCCCATCATTCCCGCCTTCCACACGGGAGATGAAGATAGTCCGTACAAGAGGAAGTGCTTGTATTGGGGTTTTGAGTGTTTGGTAGAAGATAATGGTTTAATGTGTAAAAAGGAGGAAGGTCATGATAGGACTTTGGAGTTATTCCCCTTGCACCCAGAACGCTGA 690 47.68 MVLNMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQPTSDNTTTTTTTTTLTTFDLKTFIKPDCGPRKPGSSHDHSKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPAFHTGDEDSPYKRKCLYWGFECLVEDNGLMCKKEEGHDRTLELFPLHPER 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28133933 28135192 - MELO3C010841.2.1 Cme03g02065 324076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02065 229 ProSiteProfiles 'Homeobox' domain profile. 92 157 IPR001356 GO:0003677
Cme03g02065 229 SMART HOX_1 94 161 IPR001356 GO:0003677
Cme03g02065 229 Pfam Homeodomain 97 156 IPR001356 GO:0003677
Cme03g02065 229 SUPERFAMILY Homeodomain-like 93 163 IPR009057 -
Cme03g02065 229 MobiDBLite consensus disorder prediction 76 103 - -
Cme03g02065 229 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 228 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Cme03g02065 229 CDD homeodomain 97 158 IPR001356 GO:0003677
Cme03g02065 229 MobiDBLite consensus disorder prediction 61 103 - -
Cme03g02065 229 MobiDBLite consensus disorder prediction 154 184 - -
Cme03g02065 229 Gene3D - 96 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02065 Cme-Chr3:28133933 Cme12g01833 Cme-Chr12:24715249 1.91E-27 dispersed
Cme03g02065 Cme-Chr3:28133933 Cme02g01686 Cme-Chr2:23977221 1.44E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41096 PF00046 Homeodomain 9.80E-19 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02065 - - csv:101204222 416.387