Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02065 ATGGTATTAAACATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCTCTCTCCCTTGGCTGCAAACGCTTACGCCCTCTTGCTCCTAAACTTCAACAACCCACCTCCGATAACACAACCACCACCACCACCACCACCACCCTCACCACTTTCGACCTCAAAACCTTCATCAAACCCGATTGTGGTCCTCGCAAACCAGGTTCCTCCCATGATCACAGCAAAGACTCTTCCTCCTCTTCCTCTTCCCTCCAGACAGGGGTGGAAACGCACCCAGGAGGGACACGGTGGAATCCAACTCAAGAACAAATTGGGATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCCAATGCCCAACAAATCGAACACATCACTGCACAACTTGGCAACTACGGAAAGATTGAAGGCAAGAATGTTTTTTATTGGTTTCAAAATCATAAAGCCCGTGAACGACAGAAACAGAAACGCAACAGTCTTGGTCTTCCACACTCTCCAAGAACTCCTCCCCCTCCTCCCATCATTCCCGCCTTCCACACGGGAGATGAAGATAGTCCGTACAAGAGGAAGTGCTTGTATTGGGGTTTTGAGTGTTTGGTAGAAGATAATGGTTTAATGTGTAAAAAGGAGGAAGGTCATGATAGGACTTTGGAGTTATTCCCCTTGCACCCAGAACGCTGA 690 47.68 MVLNMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQPTSDNTTTTTTTTTLTTFDLKTFIKPDCGPRKPGSSHDHSKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPAFHTGDEDSPYKRKCLYWGFECLVEDNGLMCKKEEGHDRTLELFPLHPER 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28133933 28135192 - MELO3C010841.2.1 Cme03g02065 324076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02065 229 ProSiteProfiles 'Homeobox' domain profile. 92 157 IPR001356 GO:0003677
Cme03g02065 229 SMART HOX_1 94 161 IPR001356 GO:0003677
Cme03g02065 229 Pfam Homeodomain 97 156 IPR001356 GO:0003677
Cme03g02065 229 SUPERFAMILY Homeodomain-like 93 163 IPR009057 -
Cme03g02065 229 MobiDBLite consensus disorder prediction 76 103 - -
Cme03g02065 229 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 228 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Cme03g02065 229 CDD homeodomain 97 158 IPR001356 GO:0003677
Cme03g02065 229 MobiDBLite consensus disorder prediction 61 103 - -
Cme03g02065 229 MobiDBLite consensus disorder prediction 154 184 - -
Cme03g02065 229 Gene3D - 96 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02065 - - - csv:101204222 416.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02065 Cme-Chr3:28133933 Cme12g01833 Cme-Chr12:24715249 1.91E-27 dispersed
Cme03g02065 Cme-Chr3:28133933 Cme02g01686 Cme-Chr2:23977221 1.44E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g735 . . . . . . . . Cmo05g00169 Cmo12g00505 . . . Car12g00518 Sed11g0934 . Cpe07g00494 Bhi04g00375 Tan02g1791 Cmetu12g0458 . Hepe08g1298 . Lcy13g2095 Cla08g01585 Cam08g2084 Cec08g1665 Cco08g1796 Clacu08g1770 . Cre08g1554 . . Cone17ag0854 Cone20ag0200 . . . Cme03g02065 . . . . . Bpe05g00030 Bma01g00657 Bma05g00042 . . . Cma12g00562 Cma05g00171 Car05g00145 . Cpe11g00141 . . . . . . . . . . . . . . . Lsi08g01489 Csa02g01931 Chy03g01558 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme12g01833 CCT,ECH 1 194 Wox Gene Family AT3G18010 55.8 9.1e-50 194.5
Cme04g02188 . 4 255 Wox Gene Family AT3G03660 50.2 5.7e-53 204.9
Cme06g02340 . 35 283 Wox Gene Family AT4G35550 53.7 4.2e-71 265.0
Cme07g00048 . 1 126 Wox Gene Family AT4G35550 68.5 3.1e-42 169.1
Cme03g02065 . 5 163 Wox Gene Family AT1G46480 63.2 1.1e-49 193.4
Cme12g01833 CCT,ECH 1 194 Wox Gene Family AT3G18010 55.8 9.1e-50 194.5
Cme03g02065 . 5 163 Wox Gene Family AT1G46480 63.2 1.1e-49 193.4
Cme04g02188 . 4 255 Wox Gene Family AT3G03660 50.2 5.7e-53 204.9
Cme06g02340 . 35 283 Wox Gene Family AT4G35550 53.7 4.2e-71 265.0
Cme07g00048 . 1 126 Wox Gene Family AT4G35550 68.5 3.1e-42 169.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41096 PF00046 Homeodomain 9.80E-19 CL0123 Cme TF