Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme03g02070 | ATGGTACCACCACCATTTGCCCTTGATGCTCTTTATTGCTCGGAGGAGCACTGGGAGGACGACGACGACGACGAAGAACAAGAAACGGGTTTTCGTTTTGATAAGCAATCTTACTCTAATTTAACAACCGAAACAAGTTCTCCGGTTCCGGCTGTGGTGGCAGAGCATGACCTGTTTTGGGAAAACGATGAACTGATTTCTCTGTTTTCAAGAGAGAAGCCTAATGAACTTTTTAAAACCATTCACATTGACCCTTCTCTTGCTGCCGCCCGACGAACCGCCGTCGAGTGGATGCTGAAGGTTAATGCCCATTACTCCTTCTCTGCTCTCACTGCGGTTCTCGCCGTCGATTACTTTGACCGGTTTCTGTCATGTTTTCATTTCCAAAGAGATAAGCCATGGATGTCTCAACTTGCAGCTGTTGCTTGTATCTCTCTTGCTGCCAAAGTGGAGGAGACTCACGTCCCTCTTTTATTGGACCTACAAGTGGAAGATAGTAGATATCTGTTTGAAGCCAAGACCATTAAGAAAATGGAGCTTCTTGTGCTCTCTACGCTTCAGTGGCGGATGAATCCTGTTACCCCATTTTCTTTTGTGGATTATATCACAAGAAGGCTTGGATTCAAGGACCATATGTGCTGGGAAATTCTTTGGCAGTGTGAACGAACTATTCTCTCTGTTATTTTAGAGTCAGATTTCATGTCCTTTCTTCCTTCTGCAATGGCCACCGCTACAATGCTGCACGTTTTCAAAGCTATGGAAGAACCTCATTTCAGCGTTGATTACGATTCCCAGCTTCTTGACATCCTCGGAATCGACAAGGGTAATGTGGAAGAATGCTATAAACTGATCTCAAATGCATCTAGAAGGAACGGAAACCAGTTCAAGAAACGTAAATTCGGGTCGTTAATTCCGGGGAGCCCGAACGGCGTGATGGACGTAACATTCAGCTCCGATAGCTCGAACGACTCGTGGTCAGTGGCTTCGTCGGTTTCATCTTCGCCGGAGCCATTAACGAAGAAGAACAGAGTAGATGGATCAGTGTCTGGAGATTGTCAAACATTCCGAACGCTCTCTTAA | 1080 | 45.65 | MVPPPFALDALYCSEEHWEDDDDDEEQETGFRFDKQSYSNLTTETSSPVPAVVAEHDLFWENDELISLFSREKPNELFKTIHIDPSLAAARRTAVEWMLKVNAHYSFSALTAVLAVDYFDRFLSCFHFQRDKPWMSQLAAVACISLAAKVEETHVPLLLDLQVEDSRYLFEAKTIKKMELLVLSTLQWRMNPVTPFSFVDYITRRLGFKDHMCWEILWQCERTILSVILESDFMSFLPSAMATATMLHVFKAMEEPHFSVDYDSQLLDILGIDKGNVEECYKLISNASRRNGNQFKKRKFGSLIPGSPNGVMDVTFSSDSSNDSWSVASSVSSSPEPLTKKNRVDGSVSGDCQTFRTLS | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 28174784 | 28177146 | + | MELO3C010836.2.1 | Cme03g02070 | 324081 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme03g02070 | 359 | SUPERFAMILY | Cyclin-like | 62 | 191 | IPR036915 | - | |
| Cme03g02070 | 359 | Gene3D | - | 192 | 282 | - | - | |
| Cme03g02070 | 359 | SMART | cyclin_7 | 96 | 184 | IPR013763 | - | |
| Cme03g02070 | 359 | SMART | Cyclin_C_2 | 193 | 320 | IPR004367 | - | |
| Cme03g02070 | 359 | Pfam | Cyclin, N-terminal domain | 89 | 191 | IPR006671 | - | |
| Cme03g02070 | 359 | Pfam | Cyclin, C-terminal domain | 193 | 294 | IPR004367 | - | |
| Cme03g02070 | 359 | PANTHER | CYCLINS | 33 | 343 | IPR039361 | - | |
| Cme03g02070 | 359 | SUPERFAMILY | Cyclin-like | 194 | 289 | IPR036915 | - | |
| Cme03g02070 | 359 | MobiDBLite | consensus disorder prediction | 327 | 347 | - | - | |
| Cme03g02070 | 359 | CDD | CYCLIN | 91 | 183 | IPR013763 | - | |
| Cme03g02070 | 359 | PANTHER | CYCLIN D3.1 PROTEIN | 33 | 343 | - | - | |
| Cme03g02070 | 359 | ProSitePatterns | Cyclins signature. | 91 | 122 | IPR006671 | - | |
| Cme03g02070 | 359 | Gene3D | - | 87 | 191 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme03g02070 | Cme-Chr3:28174784 | Cme06g01365 | Cme-Chr6:11818085 | 5.69E-98 | dispersed | |
| Cme01g00076 | Cme-Chr1:541452 | Cme03g02070 | Cme-Chr3:28174784 | 1.29E-75 | wgd | |
| Cme03g02070 | Cme-Chr3:28174784 | Cme07g00321 | Cme-Chr7:2043673 | 1.06E-101 | wgd | |
| Cme03g02070 | Cme-Chr3:28174784 | Cme08g00596 | Cme-Chr8:3802829 | 5.97E-88 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme03g02070 | K14505 | - | csv:101205442 | 627.861 |