Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02070 ATGGTACCACCACCATTTGCCCTTGATGCTCTTTATTGCTCGGAGGAGCACTGGGAGGACGACGACGACGACGAAGAACAAGAAACGGGTTTTCGTTTTGATAAGCAATCTTACTCTAATTTAACAACCGAAACAAGTTCTCCGGTTCCGGCTGTGGTGGCAGAGCATGACCTGTTTTGGGAAAACGATGAACTGATTTCTCTGTTTTCAAGAGAGAAGCCTAATGAACTTTTTAAAACCATTCACATTGACCCTTCTCTTGCTGCCGCCCGACGAACCGCCGTCGAGTGGATGCTGAAGGTTAATGCCCATTACTCCTTCTCTGCTCTCACTGCGGTTCTCGCCGTCGATTACTTTGACCGGTTTCTGTCATGTTTTCATTTCCAAAGAGATAAGCCATGGATGTCTCAACTTGCAGCTGTTGCTTGTATCTCTCTTGCTGCCAAAGTGGAGGAGACTCACGTCCCTCTTTTATTGGACCTACAAGTGGAAGATAGTAGATATCTGTTTGAAGCCAAGACCATTAAGAAAATGGAGCTTCTTGTGCTCTCTACGCTTCAGTGGCGGATGAATCCTGTTACCCCATTTTCTTTTGTGGATTATATCACAAGAAGGCTTGGATTCAAGGACCATATGTGCTGGGAAATTCTTTGGCAGTGTGAACGAACTATTCTCTCTGTTATTTTAGAGTCAGATTTCATGTCCTTTCTTCCTTCTGCAATGGCCACCGCTACAATGCTGCACGTTTTCAAAGCTATGGAAGAACCTCATTTCAGCGTTGATTACGATTCCCAGCTTCTTGACATCCTCGGAATCGACAAGGGTAATGTGGAAGAATGCTATAAACTGATCTCAAATGCATCTAGAAGGAACGGAAACCAGTTCAAGAAACGTAAATTCGGGTCGTTAATTCCGGGGAGCCCGAACGGCGTGATGGACGTAACATTCAGCTCCGATAGCTCGAACGACTCGTGGTCAGTGGCTTCGTCGGTTTCATCTTCGCCGGAGCCATTAACGAAGAAGAACAGAGTAGATGGATCAGTGTCTGGAGATTGTCAAACATTCCGAACGCTCTCTTAA 1080 45.65 MVPPPFALDALYCSEEHWEDDDDDEEQETGFRFDKQSYSNLTTETSSPVPAVVAEHDLFWENDELISLFSREKPNELFKTIHIDPSLAAARRTAVEWMLKVNAHYSFSALTAVLAVDYFDRFLSCFHFQRDKPWMSQLAAVACISLAAKVEETHVPLLLDLQVEDSRYLFEAKTIKKMELLVLSTLQWRMNPVTPFSFVDYITRRLGFKDHMCWEILWQCERTILSVILESDFMSFLPSAMATATMLHVFKAMEEPHFSVDYDSQLLDILGIDKGNVEECYKLISNASRRNGNQFKKRKFGSLIPGSPNGVMDVTFSSDSSNDSWSVASSVSSSPEPLTKKNRVDGSVSGDCQTFRTLS 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28174784 28177146 + MELO3C010836.2.1 Cme03g02070 324081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02070 359 SUPERFAMILY Cyclin-like 62 191 IPR036915 -
Cme03g02070 359 Gene3D - 192 282 - -
Cme03g02070 359 SMART cyclin_7 96 184 IPR013763 -
Cme03g02070 359 SMART Cyclin_C_2 193 320 IPR004367 -
Cme03g02070 359 Pfam Cyclin, N-terminal domain 89 191 IPR006671 -
Cme03g02070 359 Pfam Cyclin, C-terminal domain 193 294 IPR004367 -
Cme03g02070 359 PANTHER CYCLINS 33 343 IPR039361 -
Cme03g02070 359 SUPERFAMILY Cyclin-like 194 289 IPR036915 -
Cme03g02070 359 MobiDBLite consensus disorder prediction 327 347 - -
Cme03g02070 359 CDD CYCLIN 91 183 IPR013763 -
Cme03g02070 359 PANTHER CYCLIN D3.1 PROTEIN 33 343 - -
Cme03g02070 359 ProSitePatterns Cyclins signature. 91 122 IPR006671 -
Cme03g02070 359 Gene3D - 87 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02070 K14505 CYCD3; cyclin D3, plant - csv:101205442 627.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02070 Cme-Chr3:28174784 Cme06g01365 Cme-Chr6:11818085 5.69E-98 dispersed
Cme01g00076 Cme-Chr1:541452 Cme03g02070 Cme-Chr3:28174784 1.29E-75 wgd
Cme03g02070 Cme-Chr3:28174784 Cme07g00321 Cme-Chr7:2043673 1.06E-101 wgd
Cme03g02070 Cme-Chr3:28174784 Cme08g00596 Cme-Chr8:3802829 5.97E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g719 Blo01g01517 Blo12g00970 . . . . Bma04g00152 . Cmo05g00163 Cmo12g00510 Cma01g01813 Cma09g00261 Car01g01415 Car12g00528 Sed10g2003 Cpe06g00180 Cpe07g00498 Bhi04g00381 Tan02g0947 Cmetu01g0988 . Hepe08g1303 . Lcy13g2102 Cla08g01590 Cam08g2089 Cec08g1670 Cco08g1802 Clacu08g1775 . Cre08g1559 . Cone7ag1351 Cone17ag0862 Cone20ag0209 Lsi04g01520 Csa04g02445 . Cme03g02070 Blo17g00869 Blo18g00706 . . Bpe02g01789 Bpe05g00034 Bma01g00666 . Sed11g0930 Cmo01g01869 Cmo09g00254 Cma12g00567 Cma05g00163 Car05g00140 Car09g00219 Cpe11g00137 Cpe02g00199 Bhi09g03276 Tan01g4734 Cmetu07g1860 . Hepe01g1799 Mch11g0329 . Cla05g02076 Cam05g2226 Cec05g2245 Cco05g2287 Clacu05g2220 Cmu05g2087 Cre05g2211 Lsi08g01495 Csa02g01926 Chy07g00160 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g00140 . 1 294 Core Cell Cycle Gene Families AT3G48750 86.1 2.0e-151 531.9
Cme08g02049 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.5 7.0e-96 347.4
Cme08g02049 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.5 1.3e-153 539.3
Cme07g00023 . 11 332 Core Cell Cycle Gene Families AT3G54180 61.7 7.9e-114 407.1
Cme10g00140 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.1 2.2e-92 335.9
Cme08g02049 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 3.4e-123 438.0
Cme07g00023 . 11 332 Core Cell Cycle Gene Families AT2G38620 53.1 1.2e-88 323.2
Cme07g00023 . 1 330 Core Cell Cycle Gene Families AT1G76540 78.8 3.3e-152 534.6
Cme08g02049 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 5.3e-118 421.0
Cme10g00140 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.7 1.2e-93 340.1
Cme07g00023 . 8 330 Core Cell Cycle Gene Families AT1G20930 82.7 1.1e-155 546.2
Cme08g02049 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 2.0e-120 429.1
Cme10g00140 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.7 5.2e-97 351.3
Cme05g00041 . 1 514 Core Cell Cycle Gene Families AT5G10270 74.3 1.5e-215 745.7
Cme04g01874 . 1 427 Core Cell Cycle Gene Families AT5G10270 79.9 1.7e-203 705.7
Cme02g00153 CCT,ECH 113 431 Core Cell Cycle Gene Families AT5G10270 51.6 7.6e-98 354.8
Cme06g01197 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 2.2e-97 353.2
Cme12g01566 . 88 404 Core Cell Cycle Gene Families AT5G10270 53.2 1.1e-96 350.9
Cme09g00045 . 137 453 Core Cell Cycle Gene Families AT5G10270 52.4 9.2e-96 347.8
Cme06g00688 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.3 1.2e-95 347.4
Cme10g01289 . 147 463 Core Cell Cycle Gene Families AT5G10270 51.8 7.8e-95 344.7
Cme11g01212 . 142 458 Core Cell Cycle Gene Families AT5G10270 52.0 3.0e-94 342.8
Cme05g01749 CCT,ECH 101 419 Core Cell Cycle Gene Families AT5G10270 51.0 1.1e-93 340.9
Cme12g01970 . 120 438 Core Cell Cycle Gene Families AT5G10270 50.7 1.1e-91 334.3
Cme11g01211 . 128 444 Core Cell Cycle Gene Families AT5G10270 50.3 2.0e-90 330.1
Cme05g00041 . 65 513 Core Cell Cycle Gene Families AT5G64960 71.9 8.8e-178 620.2
Cme04g01874 . 65 427 Core Cell Cycle Gene Families AT5G64960 76.8 3.0e-162 568.5
Cme06g01197 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 2.0e-81 300.1
Cme12g01566 . 142 404 Core Cell Cycle Gene Families AT5G64960 52.9 4.5e-81 298.9
Cme02g00153 CCT,ECH 167 431 Core Cell Cycle Gene Families AT5G64960 50.7 5.9e-81 298.5
Cme11g01212 . 196 458 Core Cell Cycle Gene Families AT5G64960 52.9 1.7e-80 297.0
Cme10g01289 . 201 463 Core Cell Cycle Gene Families AT5G64960 52.5 1.9e-79 293.5
Cme11g01211 . 182 444 Core Cell Cycle Gene Families AT5G64960 53.2 1.9e-79 293.5
Cme09g00045 . 191 453 Core Cell Cycle Gene Families AT5G64960 52.5 5.5e-79 292.0
Cme06g00688 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.1 1.2e-78 290.8
Cme02g01701 . 4 416 Core Cell Cycle Gene Families AT1G73690 73.6 8.7e-174 606.7
Cme02g01701 . 12 344 Core Cell Cycle Gene Families AT1G66750 77.2 2.3e-154 542.0
Cme02g01701 . 8 417 Core Cell Cycle Gene Families AT1G18040 74.4 2.5e-173 605.1
Cme08g01743 . 1 392 Core Cell Cycle Gene Families AT5G63610 77.7 1.3e-173 606.3
Cme05g01984 . 1 308 Core Cell Cycle Gene Families AT4G28980 56.3 9.7e-95 344.4
Cme03g00509 . 5 513 Core Cell Cycle Gene Families AT1G44110 54.8 4.9e-136 481.5
Cme01g02653 . 225 503 Core Cell Cycle Gene Families AT1G44110 55.2 1.7e-88 323.6
Cme04g00381 . 206 472 Core Cell Cycle Gene Families AT1G44110 55.4 5.1e-85 312.0
Cme07g00308 . 95 374 Core Cell Cycle Gene Families AT1G44110 51.1 1.7e-80 297.0
Cme03g02080 . 90 373 Core Cell Cycle Gene Families AT1G44110 50.7 1.6e-78 290.4
Cme01g02653 . 224 499 Core Cell Cycle Gene Families AT1G77390 51.4 2.2e-77 286.6
Cme04g00381 . 206 472 Core Cell Cycle Gene Families AT1G77390 52.1 2.1e-75 280.0
Cme07g00308 . 100 372 Core Cell Cycle Gene Families AT1G77390 50.5 7.4e-73 271.6
Cme03g01666 . 204 457 Core Cell Cycle Gene Families AT1G77390 50.4 1.0e-66 251.1
Cme04g00381 . 7 484 Core Cell Cycle Gene Families AT5G25380 53.5 4.9e-117 418.3
Cme07g00308 . 99 367 Core Cell Cycle Gene Families AT5G25380 50.6 8.7e-74 274.6
Cme03g00509 . 238 506 Core Cell Cycle Gene Families AT5G25380 51.4 2.2e-72 270.0
Cme01g00101 . 120 343 Core Cell Cycle Gene Families AT5G25380 52.0 1.2e-59 227.6
Cme04g00381 . 3 422 Core Cell Cycle Gene Families AT5G11300 51.5 3.2e-94 342.4
Cme03g00509 . 229 450 Core Cell Cycle Gene Families AT5G11300 51.7 1.9e-62 236.9
Cme07g00308 . 95 311 Core Cell Cycle Gene Families AT5G11300 54.4 7.9e-61 231.5
Cme03g02080 . 92 307 Core Cell Cycle Gene Families AT5G11300 52.3 3.0e-60 229.6
Cme01g00101 . 120 285 Core Cell Cycle Gene Families AT5G11300 51.5 2.4e-41 166.8
Cme01g02653 . 157 503 Core Cell Cycle Gene Families AT1G15570 60.9 2.6e-118 422.5
Cme03g00509 . 239 510 Core Cell Cycle Gene Families AT1G15570 51.6 8.3e-72 268.1
Cme01g02653 . 4 503 Core Cell Cycle Gene Families AT1G80370 51.2 6.4e-120 427.9
Cme07g00308 . 95 372 Core Cell Cycle Gene Families AT1G80370 50.4 4.4e-76 282.3
Cme03g02080 . 98 370 Core Cell Cycle Gene Families AT1G80370 52.7 2.2e-75 280.0
Cme03g00509 . 239 511 Core Cell Cycle Gene Families AT1G80370 52.4 2.0e-73 273.5
Cme03g02080 . 5 372 Core Cell Cycle Gene Families AT5G43080 58.0 3.1e-114 408.7
Cme07g00308 . 1 377 Core Cell Cycle Gene Families AT5G43080 56.3 8.3e-112 400.6
Cme04g00381 . 208 484 Core Cell Cycle Gene Families AT5G43080 53.2 5.5e-79 291.6
Cme03g02080 . 1 372 Core Cell Cycle Gene Families AT1G47210 59.9 5.4e-125 444.5
Cme07g00308 . 1 377 Core Cell Cycle Gene Families AT1G47210 54.9 1.8e-112 402.9
Cme04g00381 . 208 474 Core Cell Cycle Gene Families AT1G47210 52.8 1.6e-76 283.5
Cme01g02653 . 226 498 Core Cell Cycle Gene Families AT1G47210 51.8 2.1e-76 283.1
Cme03g02080 . 78 372 Core Cell Cycle Gene Families AT1G47220 56.9 9.6e-94 340.5
Cme07g00308 . 95 375 Core Cell Cycle Gene Families AT1G47220 58.7 2.8e-93 339.0
Cme04g00381 . 208 474 Core Cell Cycle Gene Families AT1G47220 51.7 2.3e-71 266.2
Cme03g02080 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.9 4.1e-117 418.3
Cme07g00308 . 1 377 Core Cell Cycle Gene Families AT1G47230 57.4 5.0e-115 411.4
Cme01g02653 . 228 498 Core Cell Cycle Gene Families AT1G47230 52.0 1.6e-73 273.5
Cme04g00381 . 209 474 Core Cell Cycle Gene Families AT1G47230 52.0 2.3e-72 269.6
Cme08g01425 . 1 449 Core Cell Cycle Gene Families AT4G37490 54.1 1.3e-114 410.2
Cme08g01425 . 1 342 Core Cell Cycle Gene Families AT5G06150 52.2 3.9e-82 302.0
Cme08g01425 . 1 406 Core Cell Cycle Gene Families AT3G11520 56.9 2.1e-108 389.4
Cme08g00990 . 115 341 Core Cell Cycle Gene Families AT3G11520 51.5 5.6e-61 231.9
Cme05g00225 . 14 307 Core Cell Cycle Gene Families AT2G26760 50.7 1.9e-72 270.0
Cme08g00990 . 12 384 Core Cell Cycle Gene Families AT2G17620 62.7 3.0e-119 425.6
Cme07g00058 . 37 450 Core Cell Cycle Gene Families AT2G17620 50.4 1.9e-102 369.8
Cme05g00225 . 139 300 Core Cell Cycle Gene Families AT2G17620 54.0 2.1e-40 163.7
Cme08g00990 . 11 341 Core Cell Cycle Gene Families AT4G35620 59.4 6.5e-94 341.3
Cme07g00058 . 30 405 Core Cell Cycle Gene Families AT4G35620 50.1 7.2e-85 311.2
Cme05g00225 . 139 300 Core Cell Cycle Gene Families AT4G35620 56.4 3.4e-42 169.5
Cme07g00058 . 1 448 Core Cell Cycle Gene Families AT1G20610 62.5 7.3e-142 500.7
Cme08g00990 . 15 384 Core Cell Cycle Gene Families AT1G20610 61.0 6.4e-114 407.9
Cme05g00225 . 139 300 Core Cell Cycle Gene Families AT1G20610 55.2 7.7e-43 171.8
Cme07g00058 . 1 345 Core Cell Cycle Gene Families AT1G76310 61.4 9.9e-102 367.1
Cme08g00990 . 11 280 Core Cell Cycle Gene Families AT1G76310 57.2 9.7e-73 270.8
Cme05g00225 . 135 306 Core Cell Cycle Gene Families AT1G76310 54.0 3.0e-42 169.5
Cme08g01425 . 177 343 Core Cell Cycle Gene Families AT1G76310 51.5 5.7e-41 165.2
Cme01g01500 . 179 632 Core Cell Cycle Gene Families AT1G16330 52.7 3.9e-115 412.5
Cme09g00668 . 1 329 Core Cell Cycle Gene Families AT1G70210 63.5 1.7e-109 392.9
Cme10g00495 . 1 385 Core Cell Cycle Gene Families AT1G70210 53.5 1.7e-93 339.7
Cme08g00737 . 43 320 Core Cell Cycle Gene Families AT2G22490 55.2 5.1e-80 295.0
Cme03g02070 . 52 329 Core Cell Cycle Gene Families AT4G34160 50.3 1.4e-67 253.8
Cme03g02070 . 57 332 Core Cell Cycle Gene Families AT5G67260 50.4 5.9e-69 258.5
Cme08g00737 . 48 271 Core Cell Cycle Gene Families AT5G65420 58.1 6.8e-69 257.7
Cme03g01823 . 63 262 Core Cell Cycle Gene Families AT5G65420 56.9 8.0e-62 234.2
Cme08g00737 . 53 229 Core Cell Cycle Gene Families AT5G10440 59.3 3.5e-55 211.8
Cme03g01823 . 58 236 Core Cell Cycle Gene Families AT5G10440 53.9 6.8e-51 197.6
Cme08g00534 . 1 277 Core Cell Cycle Gene Families AT5G27620 66.1 1.9e-101 365.9
Cme11g01851 . 1 82 Core Cell Cycle Gene Families AT2G27960 93.9 1.7e-42 168.3
Cme12g00492 . 1 96 Core Cell Cycle Gene Families AT2G27960 81.3 1.6e-40 161.8
Cme11g01851 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 3.8e-39 157.1
Cme10g00004 . 6 1024 Core Cell Cycle Gene Families AT3G12280 72.0 0.0e+00 1406.3
Cme01g02346 . 2 489 Core Cell Cycle Gene Families AT1G02970 58.8 8.7e-155 543.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005600 0 1 3 4 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 40