Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02072 ATGTCAGGAATGGCTTTGGTGAAACTATCAATCCTCTTATGTGCAATGTTATTTGGTCCTTCTCTCTCAGGAGCGGTTTCTCCACAGAACATATTCATTCTTGGTGGTCAGAGCAACATGGCTGGTCGAGGTGGAGTTGAAAAAAATTCGAGTGGAAAATTTGAGTGGGATGGTGTGATCCCACCAGATTGTAAACCCAACCCATCTATTCTACGACTCAACGCTGCACGTCAATGGGAGGTAGCACGAGAGCCTCTCCATTGGGATATCGACGTTATGAAGGCAAATGGAATTAGTCCAGGAATGGGATTTGCTCATGAACTTCTAGTAAAGGCAGGGCCAAGAGCTGGTGTTGTGGGTTTAGTTCCTACTGCTATAGGTGGCACATTCATCCGACAATGGTTGAAAAATGATAGCTATCCAAATGCAACATATTACCAAAATTTAGTTGAACGGATTCAAGCGTCGGATAAAGAAGGTGGAGTTGTTCGTGCTCTTTTATGGTTCCAAGGGGAAAGCGATGCGGCTGTGAAAGAGGAAGCTATAAATTATAAAGACAACTTGAAGACTTTCATTATGGACCTTCGCAGAGACATCCAGCCTAGATTTTTACCTGTAATTATTGTTAAAATAGCCCTCTACGACTTTCTTCGGGCGAATGCTACTGATAATTTGTCAATCGTGAGAGCTGCACAAGAAGCAGTTAGCAAGGAGGTGCCAGATGTATCGATCATCGACTCATGGAAATTGCCGATGAACTTAAAAACACGTGAAGGCTTTAACTTGGATCGTGGTCATTTTAATACCACAATCGAACTTACTGCTGGTAAATGGTTGGCTGATGCCTACCTCTCACGTTATAGCCGGTTACTCTAA 876 43.15 MSGMALVKLSILLCAMLFGPSLSGAVSPQNIFILGGQSNMAGRGGVEKNSSGKFEWDGVIPPDCKPNPSILRLNAARQWEVAREPLHWDIDVMKANGISPGMGFAHELLVKAGPRAGVVGLVPTAIGGTFIRQWLKNDSYPNATYYQNLVERIQASDKEGGVVRALLWFQGESDAAVKEEAINYKDNLKTFIMDLRRDIQPRFLPVIIVKIALYDFLRANATDNLSIVRAAQEAVSKEVPDVSIIDSWKLPMNLKTREGFNLDRGHFNTTIELTAGKWLADAYLSRYSRLL 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28182286 28183372 + MELO3C010834.2.1 Cme03g02072 324083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02072 291 SUPERFAMILY SGNH hydrolase 30 287 - -
Cme03g02072 291 Gene3D SGNH hydrolase 27 288 IPR036514 -
Cme03g02072 291 PANTHER BNACNNG62850D PROTEIN 26 287 - -
Cme03g02072 291 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 29 284 IPR005181 -
Cme03g02072 291 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 26 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02072 - - - csv:101219010 481.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02072 Cme-Chr3:28182286 Cme04g00871 Cme-Chr4:11352390 4.18E-121 dispersed
Cme03g02072 Cme-Chr3:28182286 Cme03g02073 Cme-Chr3:28184814 4.98E-25 tandem
Cme03g00343 Cme-Chr3:4578511 Cme03g02072 Cme-Chr3:28182286 1.65E-85 transposed
Cme01g00095 Cme-Chr1:649650 Cme03g02072 Cme-Chr3:28182286 7.99E-59 wgd
Cme03g02072 Cme-Chr3:28182286 Cme07g00318 Cme-Chr7:2030970 3.05E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g716 . . . . . . . . . Cmo12g00513 Cma01g01811 . Car01g01413 . Sed10g2010 . . Bhi04g00383 Tan02g0958 Cmetu01g1629 . Hepe03g0733 . Lcy13g2107 Cla08g01592 Cam08g2092 Cec08g1673 Cco08g1804 Clacu08g1777 . . . . Cone17ag0865 . Lsi04g01518 . . Cme03g02072 . . . . . . . . Sed01g2693 Cmo01g01867 . Cma12g00570 . . . . Cpe02g00201 Bhi09g03274 Tan01g4732 Cmetu07g0030 . Hepe01g1801 Mch11g0331 . Cla05g02078 Cam05g2228 Cec05g2247 Cco05g2289 Clacu05g2222 Cmu05g2089 Cre05g2213 Lsi08g01498 Csa02g01924 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000128 0 5 0 0 0 8 1 8 7 3 6 7 11 6 8 12 7 1 11 7 5 24 17 10 14 13 7 4 12 0 214