Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme03g02080 | ATGGCCGCCTCAGAGAACTGTGCCCGTGTAACTCGTGCTTCCAAGAAGAGAGCTGCGGCGGCCACCGTGGTCGAGGGCCAATCGGCAAATAAAAAGCGGGTGGTTCTTGGAGAGCTTTCCAATGTTCAGAATGTTAATGTCTCGGTGGCAGCACAGAAGAGGAAGGCCAAGTCCCAGATGACTAAATGTAAGCCTAAGAAGAGAGCGAAGGTTGGTGTTGCTCCGAAGATCAAGACGATAGTTGTTTCTGAAGATAACGAACCCAAGTTGACCGTCGATGATCTTTTGGATGACCCAGAGATGAAGGGGCCTTATTCCTCTGATATTTATGCTTATCTTCGGAAAATGGAGGCGGAACCAAAAAGAAGGCCGATTCCAAATTACATAGAGAAGATTCAGACGGACGTAAGTGCTAATATGAGAGGGGTTTTGGTTGATTGGATGGTTGAGGTAGCAGAAGAATACAAGCTGGGCTCCGATACTCTGTATTTATCCATCTCATACCTCGACAGGTTCCTATCAATGAACATACTCAGTAGGCAAAGACTTCAATTGTTGGGGGTTTCTTCAATGCTTATTGCCTCGAAGTATGAAGAAATCACCCCTCCTCATGTAGAGGATTTCTGCTACATAACAGATAATACTTATAGAAGAGATGAGGTTGTGAAGATGGAGGCTGATATACTCAAGTCTTTGAACTTTGAAATGGGAAATCCTACTGCCAAGACATTCTTAAGGAGGTTCACTAATATTGCTCAAGAGGATTTCAAAATACCAAATCTGCAGTTGGAATTTCTGGGTTATTACCTTGCTGAGCTTAGCTTATTGGACTATAATTTTGTTAAGTTCTTGCCTTCTTTGGTTGCTGCTTCAGTTGTTTTTCTTGCAAAATTTATCATCCGACCGAAGCTGCATCCTTGGGGTCCAAGCATACAACAATACACAGGCTACAAGCCAGCTGATCTAAGGCCATGTGTTATTCTGTTACATGATTTATATATGGCCAGAAGAGGAGGGTCTTTGATAGCTGTGAGAGAAAAATACAAGCTACATAGGTTCAAGTGTGTTGCAATGATGCCTTCACCTCCTGAGATCCCCTTTTCCTATTTCGAAGAAGCTTAG | 1122 | 43.23 | MAASENCARVTRASKKRAAAATVVEGQSANKKRVVLGELSNVQNVNVSVAAQKRKAKSQMTKCKPKKRAKVGVAPKIKTIVVSEDNEPKLTVDDLLDDPEMKGPYSSDIYAYLRKMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGSDTLYLSISYLDRFLSMNILSRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRRFTNIAQEDFKIPNLQLEFLGYYLAELSLLDYNFVKFLPSLVAASVVFLAKFIIRPKLHPWGPSIQQYTGYKPADLRPCVILLHDLYMARRGGSLIAVREKYKLHRFKCVAMMPSPPEIPFSYFEEA | 373 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 28205221 | 28207380 | - | MELO3C010828.2.1 | Cme03g02080 | 324091 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme03g02080 | 373 | CDD | CYCLIN | 239 | 330 | IPR013763 | - | |
| Cme03g02080 | 373 | Gene3D | - | 124 | 237 | - | - | |
| Cme03g02080 | 373 | CDD | CYCLIN | 140 | 229 | IPR013763 | - | |
| Cme03g02080 | 373 | Pfam | Cyclin, C-terminal domain | 239 | 362 | IPR004367 | - | |
| Cme03g02080 | 373 | PIRSF | Cyclin_A_B_D_E | 1 | 367 | IPR039361 | - | |
| Cme03g02080 | 373 | PANTHER | CYCLIN-A3-1-RELATED | 24 | 372 | - | - | |
| Cme03g02080 | 373 | SUPERFAMILY | Cyclin-like | 239 | 364 | IPR036915 | - | |
| Cme03g02080 | 373 | Gene3D | - | 108 | 358 | - | - | |
| Cme03g02080 | 373 | ProSitePatterns | Cyclins signature. | 141 | 172 | IPR006671 | - | |
| Cme03g02080 | 373 | SMART | Cyclin_C_2 | 239 | 362 | IPR004367 | - | |
| Cme03g02080 | 373 | SMART | cyclin_7 | 146 | 230 | IPR013763 | - | |
| Cme03g02080 | 373 | SMART | cyclin_7 | 243 | 331 | IPR013763 | - | |
| Cme03g02080 | 373 | PANTHER | CYCLINS | 24 | 372 | IPR039361 | - | |
| Cme03g02080 | 373 | SUPERFAMILY | Cyclin-like | 97 | 236 | IPR036915 | - | |
| Cme03g02080 | 373 | Pfam | Cyclin, N-terminal domain | 108 | 236 | IPR006671 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme03g02080 | Cme-Chr3:28205221 | Cme04g00381 | Cme-Chr4:3058212 | 3.54E-100 | dispersed | |
| Cme01g00101 | Cme-Chr1:705414 | Cme03g02080 | Cme-Chr3:28205221 | 8.46E-97 | wgd | |
| Cme03g02080 | Cme-Chr3:28205221 | Cme07g00308 | Cme-Chr7:1981391 | 1.25E-166 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme03g02080 | K06627 | - | csv:101206145 | 697.197 |