Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02084 ATGTTTCGGTTCGTCGGCTTGTTTCTTCCCTTCCTTGACCAACTTCTTTTAGTTTTCCCACCAATAATCATCATCTTCCTCCTCCGTTTACTTCAATCCAAGAACACTGGCCGGGAGCGGCTCCCGCCGAGCCCGCCCGGGGGTTCCTTCCCCATTCTTGGTCATCTTTATCTCCTCAAGAACCCCCTCCACCGCACCCTCGCAAAACTCTCCGCCCAACACGGCCCAATTCTTCTCCTCCATTTTGGCTCCCGCCCCGTCCTCCTAATTTCCTCCCCATCCGCAGCACAAGAATGTCTAACCAAAAACGACATCGCTTTTGCCTCTCGCCCTCGGCTCTCCGTCGGAAAGCACCTTGGCTGCAATTACACCAACATCCTTTGGGCCCCCTACGGACCCCATTGGCGCAACCTAAGACGCATCGCCACCCTCCAGATTCTCTCACCCAACCGAGTCCATATGTACGGTAGCGTGAGAAGAGAGGAAGTGAAGTTCTTGATTCGCAGGCTGTGCGGAGGCATTGGAGAAAATGGGTTTCGAATGGTGGAGATGAAGAAGGTGTTTTTCGAGACGGTGCTTAATGTGATGATGAGGATGATCGCTGGTAAGCGGTATTGCGGGGAGAGAGAATCGGAGGAAGCAGAGAGATTCAGAGAGATTGTGAAGGAAGGGTTTAAAGTGAGTGGGGCTACGAATATGGGGGACTTTCTGCCAAGTTTTTTGAAATGGGTTGGGTTGTGGAGTGGAATTGAGAAAAGGATGGAGAGATTGCAAGGTTTAAGAGATGGGTTTATGCAGAATTTGATTGAGGAACGACGAAGGATGAGAAGGGATAATGGAGATGAAATGAAAGAATCCAGAGTAATGGCGGATGTTCTTTTGGATTTGCAACAAACTGAACCTCACTATTATACGGATGCTTTCATTCGATGCATGATGCAAGGGATGCTATCAGCAGGGACCGACACATCATCAGCAACAATGGAATGGGCACTTTCCCTACTACTCAACCACCCTAATTCTCTCCTCAAAGCCCAAGAAGAAATCGACACCCACGTGGGTCCAAACAGACTCCTTCAAGAATCCGATCTCTCAAACCTACCCTTCCTCCACTCTGTTCTCAAAGAGACGCTCCGCATCTACCCAGTCGCCCCATTGCTGGTTCCTCACGAGTCCTCCCAAGACTGCGTCGTTGGAGGCTTCCACGTGCCTCGCGGCACAATGTTGCTCGTAAACAACTGGGCCATTCAAAACGACGGCGATTCATGGCCGGACCCAGCAGAGTTTAGGCCGGAGAGGTTCCAGGATGTAGGGGAAGTGGAGGAGGGGTTGAGATGGCTGCCGTTTGGGGCGGGGCGGAGGGGTTGTCCCGGTGAGGGATTGGCGATGCGGATGGTGGGGCTTACTTTGGGGTCTTTGATTCAGTGTTTTGAGTGGCGGAGAGTGGGGGAGGAGATGGTGGACATGAGCGAAGGCGGTGGCCTTACAATGCCCAGAGCCAAACCATGTTGGGCCAAATGTAGGCCTCGCCCCATTTTACTTCGACTTCTCCCCACCTTTTGA 1563 52.14 MFRFVGLFLPFLDQLLLVFPPIIIIFLLRLLQSKNTGRERLPPSPPGGSFPILGHLYLLKNPLHRTLAKLSAQHGPILLLHFGSRPVLLISSPSAAQECLTKNDIAFASRPRLSVGKHLGCNYTNILWAPYGPHWRNLRRIATLQILSPNRVHMYGSVRREEVKFLIRRLCGGIGENGFRMVEMKKVFFETVLNVMMRMIAGKRYCGERESEEAERFREIVKEGFKVSGATNMGDFLPSFLKWVGLWSGIEKRMERLQGLRDGFMQNLIEERRRMRRDNGDEMKESRVMADVLLDLQQTEPHYYTDAFIRCMMQGMLSAGTDTSSATMEWALSLLLNHPNSLLKAQEEIDTHVGPNRLLQESDLSNLPFLHSVLKETLRIYPVAPLLVPHESSQDCVVGGFHVPRGTMLLVNNWAIQNDGDSWPDPAEFRPERFQDVGEVEEGLRWLPFGAGRRGCPGEGLAMRMVGLTLGSLIQCFEWRRVGEEMVDMSEGGGLTMPRAKPCWAKCRPRPILLRLLPTF 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28227383 28229540 + MELO3C010823.2.1 Cme03g02084 324095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02084 520 Gene3D Cytochrome P450 34 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g02084 520 Pfam Cytochrome P450 45 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g02084 520 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506|GO:0016705
Cme03g02084 520 PANTHER CYTOCHROME P450 82C3-RELATED 24 517 - -
Cme03g02084 520 Coils Coil 265 285 - -
Cme03g02084 520 PRINTS P450 superfamily signature 319 336 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g02084 520 PRINTS P450 superfamily signature 372 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g02084 520 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g02084 520 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g02084 520 PANTHER CYTOCHROME P450 81E8 24 517 - -
Cme03g02084 520 SUPERFAMILY Cytochrome P450 42 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g02084 520 PRINTS E-class P450 group I signature 71 90 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g02084 520 PRINTS E-class P450 group I signature 95 116 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g02084 520 PRINTS E-class P450 group I signature 191 209 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g02084 520 PRINTS E-class P450 group I signature 308 325 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g02084 520 PRINTS E-class P450 group I signature 328 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g02084 520 PRINTS E-class P450 group I signature 371 389 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g02084 520 PRINTS E-class P450 group I signature 412 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g02084 520 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g02084 520 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02084 - - - csv:101220916 940.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02084 Cme-Chr3:28227383 Cme07g00886 Cme-Chr7:8967186 0 dispersed
Cme03g02084 Cme-Chr3:28227383 Cme07g00305 Cme-Chr7:1969355 0 wgd
Cme03g02084 Cme-Chr3:28227383 Cme08g00605 Cme-Chr8:3870530 3.40E-158 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g687 . . . . Bpe02g00445 . . . . . . . . . . . . . . . . . . . Cla08g01605 . . . . . . . . . . Lsi04g01506 Csa04g02458 . Cme03g02084 . . . . . . . . . . . . . . . . Cpe02g00207 . . . . . . . Cla05g02088 . . . . . . Lsi08g01509 . Chy07g00172 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000014 8 19 13 8 6 18 15 17 16 19 16 18 14 17 19 19 18 9 12 19 19 25 15 12 12 20 11 24 18 21 477