Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02100 ATGAATTTTACGTACATGGGGAGAAGCTTTGATGATCTGAGCAACGGGGATAGTTCTGGGGCTTTTAGTGACTGTAATAGCGATAGATCCGGGGAGTTTCCGACGGGGTCGTCGCAAAGTCGGCGGCTTTTGATTGCTTGTGCTTCTGATAACTCCGACGAGTTAATTCGGCATCTGGTTTTGGACCTTGAGTCCTGTTCGATTGAGGAGCAGAAACAGGCGGCTATGGAGATCAGACTTCTAGCCAAGAACAAACCAGAGAATCGATTGAAGATCGCTAAAGCCGGTGCGGTTAGACCGTTGATTTCGCTGATATCGTGTACGGATCCTCAGCTACAAGAGTACGGCGTGACGGCGATTTTGAATCTCTCGCTTTGCGACGAGAATAAGGAGTTGATAGCGGCGTCTGGTGCGATTAAGCCTCTTGTGAGAGCTCTCATGTCCGGAACTCCAACGGCGAAGGAGAACGCGGCTTGTGCTTTACTGCGGCTTTCGCAAATGGAAGAGAACAAGATAGCAATCGGACGGTCGGGAGCGATTCCACTTCTGGTGAATCTGTTGGAGAGCGGCGGGTTTCGGGGAAAGAAGGACGCGTCGACGGCACTGTATTCGTTATGCTCGGTTAAAGAGAACAAAATCAGAGCGGTGAAAGCGGGAATCATGAGACCGCTGGTGGAATTAATGGCGGATTTTGGGTCAAACATGGTGGACAAGTCGGCGTTCGTGTTAAGCGTGTTGGTATCGATGCCGGAAGCCAGGACGGCTCTGGTGGAAGAAGGCGGAATTCCGGTACTAGTGGAATTAGTGGAGGACGGAACACAGCGGCAAAAGGAAATCGCGGCGGTGATTTTGCTGCAGATTTGCGAGGATAGTGTCCTTTACCGTACAATGGTGGCTCGTGAAGGAGCAATTCCGCCGCTAGTCGCTTTGTCTCAATCCGGCACTAATCGCGCCAAACAAAAGGCGGAGAAATTGATAGAGCTTCTACGGCAACCAAGATCCGGCAACTACGCTGCCACCACCTCAGATGTGTCAGTCTAA 1041 51.2 MNFTYMGRSFDDLSNGDSSGAFSDCNSDRSGEFPTGSSQSRRLLIACASDNSDELIRHLVLDLESCSIEEQKQAAMEIRLLAKNKPENRLKIAKAGAVRPLISLISCTDPQLQEYGVTAILNLSLCDENKELIAASGAIKPLVRALMSGTPTAKENAACALLRLSQMEENKIAIGRSGAIPLLVNLLESGGFRGKKDASTALYSLCSVKENKIRAVKAGIMRPLVELMADFGSNMVDKSAFVLSVLVSMPEARTALVEEGGIPVLVELVEDGTQRQKEIAAVILLQICEDSVLYRTMVAREGAIPPLVALSQSGTNRAKQKAEKLIELLRQPRSGNYAATTSDVSV 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28309111 28310989 - MELO3C010809.2.1 Cme03g02100 324111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02100 346 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 2 339 - -
Cme03g02100 346 SMART arm_5 167 207 IPR000225 GO:0005515
Cme03g02100 346 SMART arm_5 291 331 IPR000225 GO:0005515
Cme03g02100 346 SMART arm_5 85 125 IPR000225 GO:0005515
Cme03g02100 346 SMART arm_5 126 166 IPR000225 GO:0005515
Cme03g02100 346 SMART arm_5 208 248 IPR000225 GO:0005515
Cme03g02100 346 SMART arm_5 249 289 IPR000225 GO:0005515
Cme03g02100 346 Pfam Armadillo/beta-catenin-like repeat 127 165 IPR000225 GO:0005515
Cme03g02100 346 Pfam Armadillo/beta-catenin-like repeat 168 207 IPR000225 GO:0005515
Cme03g02100 346 Pfam Armadillo/beta-catenin-like repeat 86 124 IPR000225 GO:0005515
Cme03g02100 346 SUPERFAMILY ARM repeat 53 327 IPR016024 -
Cme03g02100 346 Gene3D - 36 191 IPR011989 -
Cme03g02100 346 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 96 138 IPR000225 GO:0005515
Cme03g02100 346 PANTHER U BOX DOMAIN-CONTAINING 2 339 - -
Cme03g02100 346 Gene3D - 195 343 IPR011989 -
Cme03g02100 346 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 137 179 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02100 - - - csv:101208714 651.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02100 Cme-Chr3:28309111 Cme08g00614 Cme-Chr8:3957635 3.52E-74 dispersed
Cme10g01427 Cme-Chr10:17207430 Cme03g02100 Cme-Chr3:28309111 3.82E-23 dispersed
Cme11g00990 Cme-Chr11:14099106 Cme03g02100 Cme-Chr3:28309111 5.06E-36 dispersed
Cme03g02100 Cme-Chr3:28309111 Cme01g01943 Cme-Chr1:27812459 2.89E-84 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g651 . . . . . . . . Cmo05g00143 Cmo12g00537 . . . Car12g00540 Sed10g1203 . Cpe07g00515 Bhi04g00413 Tan02g1737 Cmetu03g0693 . Hepe08g1331 . Lcy13g2131 Cla08g01619 Cam08g2121 Cec08g1706 Cco08g1830 Clacu08g1806 . Cre08g1588 . . Cone17ag0886 Cone20ag0233 . . . Cme03g02100 . . . . . . . . . . . Cma12g00597 Cma05g00141 Car05g00123 . Cpe11g00122 . . . . . . . . . . . . . . . Lsi08g01525 Csa02g01897 Chy03g01589 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009336 0 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34