Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02105 ATGCTGTGCGCTTGTTCAGGAGAGCAATTCAAGTTCGAAGAGCCACCCCAGTCCCCAGAATCACTTGCGACAAGAGATTTCTCGGCCAGTTGCCTTTCCTCGAGAACTGGAGACTGGGATTTAAAATTTGAAGATTCTCAAGTAGATGAAGTTGAATCCACTTTAAGAGAAGCCCTCTCATTAAACTATGAGGAAGCCCGAGCTTTACTGGGGAGGCTTGAATATCAAAGAGGAAATTTTGATGCTGCTCTACAGGTATTTCAAGGTATAGACATTAAATCTTTGACGCCAAGAATGGTCAAGGCAATTACTGAAAAGACAAGGGAGGAAAAGCCTCGTCCTAAAGGTGACAGTACCGCCCTCCCTAGTGGTGTAATGTCCATGCATTCTGTTAGCCTACTACTTGAAGCAATATTACTCAAGGCAAAATCACTGGAGGAACTTGGCAGATATATAGAGTCTGCAAAAGAGTGCAGGATAATTCTTGATACGGTGGAATCAGCTCTGCCTAATGGAATGCCTGAGTGCATTGGTGAAGACTGCAAATTGCAGGAAATGTTTCACAGAGCTTTGGAATTACTGCCTACTCTATGGATTAAGGGAGGGTATCTTGATGAGGCCATAAATGCCTATCGCCGAGTCCTTGTTAAACCATGGAATCTAGATCCGAACAAGTTGGCTGCCATACAGAAGGAATTGGCTGGGACATTACTCTATGGAGGTGTTGAAGCAAGTCTTCCCCTTAAGTTTCATGTATTTGGACCAAGAACACCTAAAAACAATGTAGAAGAAGCAATCCTTCTGCTACTAATTCTCATGAGGAAAGTGGCAATGCAGGAAATAAACTGGGACCCAGAGATTATGAATCATCTGACTTATGCACTTTCTATCACAAGACAATTTGAATTACTTGCCGAGCATGTGGAGCGGATCCTTCCTGGAATATATAGTCGAGCTGAGAGGTGGTACTTTCTTGCCCTATGTTACAATGCAGCAGGACAAAATGAAGCAGCTCTGAACCTTCTAACAAAAGTTTGCGGTTCCTCTGAAGTAAATCACAAGCCCCATTTTCATTCTTTTTTGTTCCTTGCAAAATTGTGTTCAGAGGATACAAAATATGCACGCGATGGAATTAAATTTGCTCGTATAATGATGAATATGGCCAGTGAACAAAGTAAACATTTCAACCCCGAAGCCCACAAATTTTTAGGTATTTGCTATGGGAATGTAGCTAGAGCGTCAGTGTCAGACTCTGAAAGAACTCTTTTCCAAAAAGAATCGTTGAACTCTCTACGAGTTTCTTCTCTCAGTAGAAGGCATGATCCAGAAGTAATGTTTAACATTAGCTTGGAAAATGCTGTGCAGAGAAATCTTGATGTTGCCTTCTACAGTGCAATGGCGTACTCAAACATGGTGGCTGATGGTTCTGGAAGAGGTTGGAAGTTGTTGACCCTCATACTTTCAGCTGAGAAACGACTCACGGACGCCGAAACCATAGTTGATTTTGCTTTGGACGAAGTTGATAGGATGGACCAATTGGATTTTCTTCGATTGAAAGCTGTTCTCAAAATTGCTCAGGAACAGCCAAAGCAAGCAATAGAAACCTACAGAATCTTGCTCGCACTAATTCAAGCACGAGACGAACATCAGCTTCAGACTAAGAACTTTGACCAATCCAAGGACTTGGAACTGGAGGCAGTGGCAGAACGTAACTTGGAACGGGCAGCCTGGCAGGATTTGGCTGCCATATATTCAAAACTTGCTTCATGGGCGGATGCAGAAATCTGTCTGAACAAAGCCAAGTCATTAGATTTTCATTGCCCCAGAGGTTGGCATACAACAGGCAAGTATTTTGAAGCTCGATCATTACACAAGGAAGCCCTTGTTTCATTCTCTGTCGCTCTATCGATTGATCCTGATTACATTCCAAGTATCATCTCAACAGCAGAAGTATTGATGAAATGTGGTAACCAATCACTTCCAATTGCGCGCAGCTTGTTGATGAATGCTGTAAGATTGGATCCTACAAGCCATGAAGCATGGTTCAACCTTGGAATGCTTTCCAAAATGGAAGGTCTTTTTCTACAATCTGCAGATTTTTTTCAAGCTGCACATGAACTCCAACTATCGGCTCCACCTCAGAGTTTCGTATAG 2154 42.57 MLCACSGEQFKFEEPPQSPESLATRDFSASCLSSRTGDWDLKFEDSQVDEVESTLREALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKSLTPRMVKAITEKTREEKPRPKGDSTALPSGVMSMHSVSLLLEAILLKAKSLEELGRYIESAKECRIILDTVESALPNGMPECIGEDCKLQEMFHRALELLPTLWIKGGYLDEAINAYRRVLVKPWNLDPNKLAAIQKELAGTLLYGGVEASLPLKFHVFGPRTPKNNVEEAILLLLILMRKVAMQEINWDPEIMNHLTYALSITRQFELLAEHVERILPGIYSRAERWYFLALCYNAAGQNEAALNLLTKVCGSSEVNHKPHFHSFLFLAKLCSEDTKYARDGIKFARIMMNMASEQSKHFNPEAHKFLGICYGNVARASVSDSERTLFQKESLNSLRVSSLSRRHDPEVMFNISLENAVQRNLDVAFYSAMAYSNMVADGSGRGWKLLTLILSAEKRLTDAETIVDFALDEVDRMDQLDFLRLKAVLKIAQEQPKQAIETYRILLALIQARDEHQLQTKNFDQSKDLELEAVAERNLERAAWQDLAAIYSKLASWADAEICLNKAKSLDFHCPRGWHTTGKYFEARSLHKEALVSFSVALSIDPDYIPSIISTAEVLMKCGNQSLPIARSLLMNAVRLDPTSHEAWFNLGMLSKMEGLFLQSADFFQAAHELQLSAPPQSFV 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28338587 28341705 + MELO3C010804.2.1 Cme03g02105 324116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02105 717 Gene3D Tetratricopeptide repeat domain 28 242 IPR011990 GO:0005515
Cme03g02105 717 Gene3D Tetratricopeptide repeat domain 424 715 IPR011990 GO:0005515
Cme03g02105 717 PANTHER PROTEIN NPG1 1 717 IPR043376 -
Cme03g02105 717 PANTHER PROTEIN NPGR1 1 717 - -
Cme03g02105 717 SUPERFAMILY TPR-like 514 708 IPR011990 GO:0005515
Cme03g02105 717 SUPERFAMILY TPR-like 46 343 IPR011990 GO:0005515
Cme03g02105 717 SMART tpr_5 574 607 IPR019734 GO:0005515
Cme03g02105 717 SMART tpr_5 608 641 IPR019734 GO:0005515
Cme03g02105 717 SMART tpr_5 319 352 IPR019734 GO:0005515
Cme03g02105 717 SMART tpr_5 513 546 IPR019734 GO:0005515
Cme03g02105 717 SMART tpr_5 678 711 IPR019734 GO:0005515
Cme03g02105 717 ProSiteProfiles TPR repeat profile. 608 641 IPR019734 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02105 Cme-Chr3:28338587 Cme06g00471 Cme-Chr6:2967349 0 dispersed
Cme03g02105 Cme-Chr3:28338587 Cme04g00983 Cme-Chr4:13315816 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02105 K21843 - csv:101209448 1372.45