Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02114 ATGGAGGACGCCTACGCCAGATCCATTACTGAGGTCTTGGATTTCTTTGGGGTTGACCCATCACAAGGTCTCACAGATGATCAGGTAATTCTAATGATATTGGCGGCAAATGCAGCAGTAGGAGTGATTACGGAAACAAATGCTGAAAAGGCTCTTTTGGAACTACGAGCATACCAGGCAGATATTGCTACTGTGTTGAGAAATGGTTGCTTTTCAATACTTCCGGCTACTGAGCTTGTTCCTGGCGATATTGTAGAAGTTGCTGTGGGGTGCAAAATTCCAGCTGATATGAGAATGATAGAGATGCTGACTAGTCAGCTACGTGTGGATCAAGCAATTCTCACAGGTGAAAGTTCCTCTGTTGAAAAAGAGCTCGAGTCCACTAGAGCTGCAAATGCTGGTACAGTGGTGGTTGCTGGCAGGGCGCGTGCTATTGTGGTAGGAGTTGGTGCAAATACTGCCATGGGCAATATACGAGATTCTATATTGCAAACAGATGACGATGTGACACCATTGAAAAAGAAGCTTGATGAATTCGGTACCTTTCTGGCTAAGGTTATTGCTGGAATTTGTGCACTTGTATGGATAGTGAACATTGGTCACTTTCGTGATCCTTCACATGGTGGGGTTTTGAGTGGTGCTATACACTACTTCAAGATTTGTGTGGTCCATTCTGTTGTGCATGGTCCACAGCTTTCTGAGTACAACGTCAGTGGTACAACATATGCTCCTGATGGTATTATTTTTGACAACACGGGAGTCCAGCTTGAGATTCCAGCTCAATTGCCTTGTATTCTACATATGGCGATGGGGTCTGCCCTCTGCAATGAGTCTACTTTGCAATATAATCCAGACAAGGGAAGCTATGAAAAAATTGGTGAATCAACTGAAGTAGCACTGCGTGTCTTTGCTGAAAAGGTTGGAATGCTTGATCCACCGAGAGAGGAAGTGAGAAATGCTATGCTTTCGTGCATGACTGCCGGCATACGTGTTATAGTTGTAACTGGAGACAATAAGGTTGCTATGACAGGTGATGGCGTCAATGATGCACCTGCACTGAAGAAAGCTGATATTGGAATTGCCATGGGTTCAGGAACAGCGGTTGCCAAGGTTGCTGTGGTCCAACTTCTTTGGGTCAACTTGGTCACTGATGGGTTGCCTGCAACTGCAATTGGATTTAACAAGCAAGACTCTGATGTAATGAAAGCTAAGCCTCGGAAGGTGAATGAAGCTGTGGTGACTGGATGGTTGTTCTTCCGTTATTTGTCAAGCATGGTTGAGGCTTCCATTCAGATTCAGAAGGCACGATTTACTTCCAAAGAAGGAATTACATGA 1335 44.72 MEDAYARSITEVLDFFGVDPSQGLTDDQVILMILAANAAVGVITETNAEKALLELRAYQADIATVLRNGCFSILPATELVPGDIVEVAVGCKIPADMRMIEMLTSQLRVDQAILTGESSSVEKELESTRAANAGTVVVAGRARAIVVGVGANTAMGNIRDSILQTDDDVTPLKKKLDEFGTFLAKVIAGICALVWIVNIGHFRDPSHGGVLSGAIHYFKICVVHSVVHGPQLSEYNVSGTTYAPDGIIFDNTGVQLEIPAQLPCILHMAMGSALCNESTLQYNPDKGSYEKIGESTEVALRVFAEKVGMLDPPREEVRNAMLSCMTAGIRVIVVTGDNKVAMTGDGVNDAPALKKADIGIAMGSGTAVAKVAVVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVTGWLFFRYLSSMVEASIQIQKARFTSKEGIT 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28374166 28395102 + MELO3C010795.2.1 Cme03g02114 324125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02114 444 Gene3D - 231 307 IPR023299 GO:0000166
Cme03g02114 444 PANTHER CALCIUM-TRANSPORTING ATPASE 26 227 - -
Cme03g02114 444 Pfam Cation transport ATPase (P-type) 273 311 - -
Cme03g02114 444 Gene3D - 21 226 - -
Cme03g02114 444 PANTHER CALCIUM-TRANSPORTING ATPASE 340 372 - -
Cme03g02114 444 PANTHER CALCIUM-TRANSPORTING ATPASE 26 227 - -
Cme03g02114 444 PANTHER CALCIUM-TRANSPORTING ATPASE 303 339 - -
Cme03g02114 444 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 223 311 IPR023299 GO:0000166
Cme03g02114 444 PANTHER CALCIUM-TRANSPORTING ATPASE 373 423 - -
Cme03g02114 444 PANTHER CALCIUM-TRANSPORTING ATPASE 231 306 - -
Cme03g02114 444 SUPERFAMILY HAD-like 304 372 IPR036412 -
Cme03g02114 444 Pfam Cation transporting ATPase, C-terminus 373 422 IPR006068 -
Cme03g02114 444 PANTHER CALCIUM-TRANSPORTING ATPASE 340 372 - -
Cme03g02114 444 PANTHER CALCIUM-TRANSPORTING ATPASE 303 339 - -
Cme03g02114 444 Gene3D - 49 163 - -
Cme03g02114 444 Gene3D - 313 339 IPR023214 -
Cme03g02114 444 Gene3D - 340 372 IPR023214 -
Cme03g02114 444 Pfam E1-E2 ATPase 59 209 - -
Cme03g02114 444 Gene3D - 373 432 - -
Cme03g02114 444 PANTHER CALCIUM-TRANSPORTING ATPASE 373 423 - -
Cme03g02114 444 PANTHER CALCIUM-TRANSPORTING ATPASE 231 306 - -
Cme03g02114 444 SUPERFAMILY Calcium ATPase, transmembrane domain M 372 426 IPR023298 -
Cme03g02114 444 SUPERFAMILY Calcium ATPase, transduction domain A 61 161 IPR008250 -
Cme03g02114 444 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 226 IPR023298 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02114 K05853 ATP2A; P-type Ca2+ transporter type 2A [EC:7.2.2.10] - csv:101211345 327.405
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02114 Cme-Chr3:28374166 Cme12g00230 Cme-Chr12:2597422 4.72E-07 dispersed
Cme03g02114 Cme-Chr3:28374166 Cme08g00653 Cme-Chr8:4271327 4.70E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g628 . . . . . . . . . Cmo12g00543 . . . Car12g00547 . . Cpe07g00522 Bhi04g00445 . . . . . Lcy13g2145 Cla08g01633 Cam08g2135 Cec08g1722 Cco08g1842 Clacu08g1822 . Cre08g1606 . Cone7ag1325 . . . . . Cme03g02114 . . . . . . . . . . . Cma12g00603 . . . . . . . . . . . . . . . . . . . Lsi08g01538 Csa02g01881 Chy03g01604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010690 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32