Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02117 ATGATTGAGGAGTTGGAATCGTCTATAGAGGTTCCATCGGTGTTCATTTGTCCAATCTCTCTCGAGCCCATGCAAGATCCAGTGACCCTCTGCTCAGGCCAAACCTACGAGCGGTCGAACATTCTGAAATGGTTCTCTTTGGGGCATTTAACTTGTCCCACAACAATGCAAGAGCTTTGGGACGATTCCGTCACACCGAATCGGACCCTTCACCAGTTGATTCACACCTGGTTTTCCCAAAAGTATTTAGCATTGAAGAAGAGATCAGAGGATGTGCAAGGGAGAGTTTTAGAGCTTTTGGATTCGTTGAAAAAGGTCAAAGGTCAAGCTAGGGTTCAGTCTCTCAAAGATCTCCGGCTTATCGTCATTACCCATTCCTCCGCTAAGAAGATGGTGGTCGACAACGGCGGTGTCGCTCTAATATCTTCTCTTTTGGGTTCTTTCACTTCCCACGCAGTTGGGTCCGAAGCCGTGGGAATCCTCGTGAATTTAGATCTAAATTCAGAGTTAAAGAAGAATCTGATTCAACCCACCAGAATATCTCTAATTGCAGATATATTAAACGAAGGGTCCATCGAAACGAAGATTAATTGTACGAAATTCATCAAGATGTTGATTGTGGGTGAGGATTTAAAAACAGAGGACGTTTCGAGTTTAAGCCTCCTCGTCGGATTGTTGAGAATGGTAAAGGATCAGAGACACCCAAATGGTGTAACCGCCGGACTCAGTCTACTCCGAACACTCTGTTCAAACGAGCCAATCAGGAAGCAACTCGTTAGCATCGGCGCCGTTGCGAAACTCGGCGGCACCCTCTCTAACTTAAACGCCGATTGCTTGGAATCGGCGCTTTATATTCTCGACGTTTTGTCATCCCTTCCAGAGGGGAGATTAGCGTTGAAGAATTGTGAAGATACGATTAGGAATTTGGTGAAGTTGTTGATGAAAGTATCCGAAATTTGTACTCAATTTGCGTTGTCGATTTTATGGGCGGTGTTCAAGCTAGCACCGGAGGAATGTGCGGTGCTCGCAGTGGAGGCTGGTTTAGCGGCAAAATTGCTGCTTGTAATACAAAGTGGGTGCAATCCAGAGCTGAAACAAAGATCTGCAGAGCTATTAAAATTGTGTAGTCTAAATTACCCAGATTCAATCTTCATTTCTAAATGTAAGCTTACGAGAACTATACAATAA 1188 44.53 MIEELESSIEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFSLGHLTCPTTMQELWDDSVTPNRTLHQLIHTWFSQKYLALKKRSEDVQGRVLELLDSLKKVKGQARVQSLKDLRLIVITHSSAKKMVVDNGGVALISSLLGSFTSHAVGSEAVGILVNLDLNSELKKNLIQPTRISLIADILNEGSIETKINCTKFIKMLIVGEDLKTEDVSSLSLLVGLLRMVKDQRHPNGVTAGLSLLRTLCSNEPIRKQLVSIGAVAKLGGTLSNLNADCLESALYILDVLSSLPEGRLALKNCEDTIRNLVKLLMKVSEICTQFALSILWAVFKLAPEECAVLAVEAGLAAKLLLVIQSGCNPELKQRSAELLKLCSLNYPDSIFISKCKLTRTIQ 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28401413 28402680 + MELO3C010791.2.1 Cme03g02117 324128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02117 395 CDD RING-Ubox_PUB 15 57 IPR045210 -
Cme03g02117 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 90 IPR013083 -
Cme03g02117 395 SUPERFAMILY RING/U-box 8 81 - -
Cme03g02117 395 ProSiteProfiles U-box domain profile. 10 84 IPR003613 GO:0004842|GO:0016567
Cme03g02117 395 SUPERFAMILY ARM repeat 85 381 IPR016024 -
Cme03g02117 395 PANTHER WDSAM1 PROTEIN 1 394 IPR045185 GO:0061630
Cme03g02117 395 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 1 394 - -
Cme03g02117 395 SMART Ubox_2 14 77 IPR003613 GO:0004842|GO:0016567
Cme03g02117 395 Gene3D - 91 373 IPR011989 -
Cme03g02117 395 Pfam U-box domain 11 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02117 Cme-Chr3:28401413 Cme06g01339 Cme-Chr6:11432445 2.62E-41 dispersed
Cme03g02117 Cme-Chr3:28401413 Cme07g00269 Cme-Chr7:1749607 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02117 - - csv:101211594 755.747