Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02125 ATGGAAGAAAAGGCTGCAAGAGCTTACGATCTTGCCGCCCTCAAGTATTGGGGACCCTCTACTCATATTAACTTTCCGTTGGATAATTATCAGACTGAACTAGAAGAAATGAAGAATATGAGCCGCCAAGAATATGTTGCCCACTTGAGAAGGAAAAGCAGTGGCTTTTCAAGGGGGGCTTCAGTTTTCCGTGGTGTCACAAGACATCATCAACATGGAAGATGGCAAGCAAGAATCGGTAGAGTTGCTGGAAACAAAGATCTTTATCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCTTATGACATAGCAGCAATCAAATTCCGCGGTGTAAATGCTGTCACCAACTTTGACATTTCCAGATATGATGTCGAGAAAATCATGGCTAGTAATACTCTACTGGCAGGCGAGCTGGCTAGAAGGAACAAGGATGTCGAACCAAGCAACGATTCGTCAATTGTTCCCTACGACTCCTCCGTTGTGTCAAATAACAATGGTGGGATTGGGATTGGGATGGAAATAAATCCCGACAACACCGCAAATGGTAATGCTAATGATTGGAAAATGGCATTGTATCAAAACCCATCACACCACCAACAACAGGCAGCTGCCGCTGCTTGTGTTGCTGACTCTTTGGATAATCATCACAGCAAGTCGATGGCTATGTCGGGCAGTTATCGAAATGCGTCGTTTTCGATGGCATTGCAGGATTTGATCGGGATTGAATCGTTAAGCGCTAATACTCATGGGATTGAAGATGATGTGAGCAAACAAGTGACGCATTTTTCGAATTCGTCATCGTTGGTGACGAGTTTGAGTAGCTCGAGAGAAGGTAGTCCTGACAAGACAAATGTGTCAATGACGTTTGGAAAGGCGCCACCCATAATGGCATCAAAGCTAATCGGTGCAACAAATGGAGTTGGAGTCGGGTCTTGGTATCCTTCCCCACAGCAGCTGAGGCCAACAGCAGCAGCCATTTCCATGGCACATTTGCCTGTTTTTGCAACATGGAATGACACTTGA 1029 45.58 MEEKAARAYDLAALKYWGPSTHINFPLDNYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVEKIMASNTLLAGELARRNKDVEPSNDSSIVPYDSSVVSNNNGGIGIGMEINPDNTANGNANDWKMALYQNPSHHQQQAAAAACVADSLDNHHSKSMAMSGSYRNASFSMALQDLIGIESLSANTHGIEDDVSKQVTHFSNSSSLVTSLSSSREGSPDKTNVSMTFGKAPPIMASKLIGATNGVGVGSWYPSPQQLRPTAAAISMAHLPVFATWNDT 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28479280 28483075 + MELO3C010784.2.1 Cme03g02125 324136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02125 342 SUPERFAMILY DNA-binding domain 2 28 IPR016177 GO:0003677
Cme03g02125 342 SMART rav1_2 62 126 IPR001471 GO:0003700|GO:0006355
Cme03g02125 342 CDD AP2 61 122 IPR001471 GO:0003700|GO:0006355
Cme03g02125 342 ProSiteProfiles AP2/ERF domain profile. 1 26 IPR001471 GO:0003700|GO:0006355
Cme03g02125 342 Gene3D AP2/ERF domain 1 28 IPR036955 GO:0003700|GO:0006355
Cme03g02125 342 Gene3D AP2/ERF domain 62 122 IPR036955 GO:0003700|GO:0006355
Cme03g02125 342 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700|GO:0006355
Cme03g02125 342 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 1 300 - -
Cme03g02125 342 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 300 - -
Cme03g02125 342 SUPERFAMILY DNA-binding domain 61 122 IPR016177 GO:0003677
Cme03g02125 342 Pfam AP2 domain 61 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02125 Cme-Chr3:28479280 Cme04g01293 Cme-Chr4:18125009 8.37E-88 dispersed
Cme05g00142 Cme-Chr5:970867 Cme03g02125 Cme-Chr3:28479280 2.06E-17 transposed
Cme03g02125 Cme-Chr3:28479280 Cme07g00259 Cme-Chr7:1695945 1.93E-07 wgd
Cme03g02125 Cme-Chr3:28479280 Cme08g00672 Cme-Chr8:4410391 1.03E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41104 PF00847 AP2 3.80E-10 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02125 K09285 - csv:101212797 615.535