Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02134 ATGGGATCGTCAACGGAGGAGGAAGCTGAGAAATTAGGCGGAGAAGAGGAAAGAGAGATAGAAGAAGATCAAATCGACCCACGAGCAGAAGAAAGAGAGCTTAAGAATCACTTACTTAAAAAATACAGTGGTTATCTTAGCAGTTTAAAGCAAGAACTTTCCAAGAAAAAGAAGAAAGGAAAACTCCCTAAAGACGCAAGACAACAACTCCTCCGTTGGTGGGAATTGCATAACAAATGGCCATACCCATCGGAAGCAGAAAAGTTGGCGCTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTTATAAACCAAAGGAAAAGGCACTGGAAGCCTTCTGAGGATGTGCAGTTTATGGGTATGGAGGGGTTTTACCATCCCAATGCTGCTGCTTTTTACTTTGATCATGGCCATTTCATGGCTGATTCTCATTATCGTTTGGGTCCATGA 462 42.64 MGSSTEEEAEKLGGEEEREIEEDQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQQLLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPNAAAFYFDHGHFMADSHYRLGP 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28553863 28554827 - MELO3C010775.2.1 Cme03g02134 324145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02134 153 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 2 144 - -
Cme03g02134 153 Gene3D - 50 123 - -
Cme03g02134 153 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 144 - -
Cme03g02134 153 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Cme03g02134 153 MobiDBLite consensus disorder prediction 1 33 - -
Cme03g02134 153 SUPERFAMILY Homeodomain-like 54 126 IPR009057 -
Cme03g02134 153 CDD homeodomain 65 117 IPR001356 GO:0003677
Cme03g02134 153 ProSiteProfiles ELK domain profile. 33 53 IPR005539 GO:0003677
Cme03g02134 153 Pfam Homeobox KN domain 73 112 IPR008422 GO:0003677|GO:0006355
Cme03g02134 153 ProSiteProfiles 'Homeobox' domain profile. 53 116 IPR001356 GO:0003677
Cme03g02134 153 MobiDBLite consensus disorder prediction 10 24 - -
Cme03g02134 153 SMART ELK_2 33 54 IPR005539 GO:0003677
Cme03g02134 153 Pfam ELK domain 33 54 IPR005539 GO:0003677
Cme03g02134 153 SMART HOX_1 55 120 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02134 Cme-Chr3:28553863 Cme10g00541 Cme-Chr10:3457746 1.05E-39 dispersed
Cme03g02134 Cme-Chr3:28553863 Cme08g00429 Cme-Chr8:2617977 1.73E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41107 PF05920 Homeobox_KN 1.30E-16 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02134 - - cmo:103487804 271.552