Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g02135 ATGATCGCCGAATCAATGCTCCTCAATCCCACGGCTCACATTTCAACCTGGGACTCCCTCGACGATCCCTCCGCCGCAATCTCTTCCTATTTCTCCGCCGGCCACGTGTCCCCCCTCGATTCCCCAACGGCGGCGCTCATGGATTTCGATTCCTCCTTATGGGAAGATCCTGACTTGCCGGCGCCTGTGGACGGCTTCTCGTGTGACCAGTTCCGGATGTATGAGTTCAAAGTCCGCTCGTGCGCTCGTGGCAGGTCGCACGATTGGACCAAATGTCCGTACGCTCACACCGGCGAGAAGGCTCGCCGCCGAGATCCCAGGAAGTTCAACTATTCAGGCGCCGAGTGCCCGGATTTACGCCATGGGTGTTGTAAAAAGGGAGATGCCTGCGAGTACGCTCATGGAACTTTCGAAATTTGGCTCCACCCAGACCGATACCGGACACAACCTTGCCGTGACGGAACTGGCTGTCGACGGCGGGTCTGTTTTCTTCGCCCACACGTCGGAGCAACTCCGGATTCCGGGGAAACAAAGTGTCAGGTCTCCACGGGCGAGAGAAATCGCTGTCCCTGCTGTGTCATCGCCGACGTCGATCCTGTTATCGCCGTCTTCGGACTCGCCGCCTCTGTCTCCAATCAGCCCTGTAATCAGTGGCGGCGAATCATCCAGCCGATTAGTTGCATTGATGCACAGCCTCCGCCTGGATGA 708 58.05 MIAESMLLNPTAHISTWDSLDDPSAAISSYFSAGHVSPLDSPTAALMDFDSSLWEDPDLPAPVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLRHGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFLRPHVGATPDSGETKCQVSTGERNRCPCCVIADVDPVIAVFGLAASVSNQPCNQWRRIIQPISCIDAQPPPG 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28568077 28569390 + MELO3C010774.2.1 Cme03g02135 324146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g02135 235 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 164 - -
Cme03g02135 235 Gene3D - 72 140 - -
Cme03g02135 235 PANTHER UNKEMPT FAMILY MEMBER 7 164 IPR045234 -
Cme03g02135 235 ProSiteProfiles Zinc finger C3H1-type profile. 110 137 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00207 Cme-Chr2:1614273 Cme03g02135 Cme-Chr3:28568077 3.85E-58 dispersed
Cme03g02135 Cme-Chr3:28568077 Cme04g02194 Cme-Chr4:29184502 1.46E-45 dispersed
Cme03g02135 Cme-Chr3:28568077 Cme07g00245 Cme-Chr7:1573011 3.09E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41108 None None None None Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g02135 - - csv:101214248 350.903